Alain Amstutz is an MD PhD, trialist / methodologist / clinical epidemiologist, working at the interface of infectious diseases (esp. HIV and respiratory viruses) and non-communicable diseases (hypertension, diabetes, cardiovascular diseases risk factors). His vision is to integrate three powerful methods of modern causal inference (embedded pragmatic trials, real-time prospective evidence synthesis, and target trial emulations from routine data) into a single, faster evidence ecosystem, complemented by mixed-methods and citizen-science work.
He is currently a senior researcher in Basel (Division of Clinical Epidemiology) and an honorary research associate in Bristol (Electronic Health Records Group, University of Bristol), and Oslo (Oslo Centre for Biostatistics and Epidemiology, OCBE), and collaborates across numerous interdisciplinary networks in Europe and Southern Africa.
His MD-PhD in Lesotho produced four large HIV service-delivery trials that informed WHO and CDC guidance. As a postdoc he refined the Trials-within-Cohorts (TwiCs) trial design, led COVID-19 IPD meta-analyses that shaped WHO and NICE recommendations, pioneered citizen science approaches to explore hair salons as an alternative space to promote HIV and sexual health prevention in Lesotho, established a large population-based cohort study in Lesotho to investigate non-communicable diseases and evaluate Community Health Worker-led models of care (ComBaCaL, co-Principal Investigator), and applied target trial emulation across >58 million NHS records via OpenSAFELY.
He currently (co-)leads several trials in Switzerland (TwiCs in the Swiss HIV Cohort Study such as RETUNE trial) and Lesotho (ComBaCaL), and provides methodological support for trials in Zambia, Zanzibar, Denmark and the UK. He coordinates two large prospective IPD meta-analyses for the BMJ Rapid Recommendations across global trial teams, and oversees methods work packages in the European platform trial consortia EU-RESPONSE, PROACT, and MPX-RESPONSE. He has secured >10 million USD as (Co-)Principal Investigator, published >100 papers (>35 as first or last author; Nature Medicine, various Lancet sub-journals, PLOS Medicine, among others), is a member of the Innovation Hub at the Swiss HIV Cohort Study and part of the global TwiCs network, serves as Associate Editor at BMC Trials, and is fluent in German, English, French and Italian. A recent portrait published by the University of Basel.
Selected Publications
Gerber, Felix, Sanchez-Samaniego, Giuliana, Gupta, Ravi, Lejone, Thabo Ishmael, Tahirsylaj, Thesar, Raeber, Fabian, Chitja, Mamakhala, Mathulise, Malebona, Kabi, Thuso, Mokaeane, Mosoetsi, Maphenchane, Malehloa, Molulela, Manthabiseng, Khomolishoele, Makhebe, Mota, Mota, Masike, Sesale, Bane, Matumaole, Mofokeng, Manthati, Sematle, Mamoronts’ane Pauline, Makabateng, Retselisitsoe, et al. (2026). Lay community health worker-led care with mobile decision support for uncontrolled hypertension: a cluster-randomized trial. Nature Medicine, 32, 915–923. https://doi.org/10.1038/s41591-026-04208-w
Jackson-Perry, David, & . (2025). Should we be paying more attention to HIV and adult ADHD? The Lancet HIV, 12(12), e813–e814. https://doi.org/10.1016/s2352-3018(25)00235-8
, Schandelmaier, Stefan, Ewald, Hannah, Speich, Benjamin, Schwenke, Johannes M, Schönenberger, Christof M, Schobinger, Stephan, Agoritsas, Thomas, Tomashek, Kay M, Nayak, Seema, Makowski, Mat, Morales-Ortega, Alejandro, Bernal-Bello, David, Pomponio, Giovanni, Ferrarini, Alessia, Ghazaeian, Monireh, Hall, Frances, Bond, Simon, García-Morales, María Teresa, et al. (2025). Effects of Janus kinase inhibitors in adults admitted to hospital due to COVID-19: a systematic review and individual participant data meta-analysis of randomised clinical trials [Journal-article]. The Lancet Respiratory Medicine, 13(6), 530–544. https://doi.org/10.1016/s2213-2600(25)00055-4
Pesonel, E., Laouénan, C., Guiraud, L., Bourner, J., Hoffmann, I., Molino, D., Tardivon, C., Bachelet, D., Mentré, F., Amstutz, A., Merson, L., Rojek, A., Cervantes Gonzalez, M., Antinori, A., Castagna, A., Nozza, S., Pourcher, V., Libois, A., Dunning, J., et al. (2025). Clinical Characterization and Outcomes of Human Clade IIb Mpox Virus Disease: A European Multicenter Mpox Observational Cohort Study (MOSAIC) [Journal-article]. Clinical Infectious Diseases, 80(5), 1060–1073. https://doi.org/10.1093/cid/ciae657
Firima, Emmanuel, Ntsoaki, Rameno, Lukau, Blaise, Tlahali, Mosa, Gonzalez Fernandez, Lucia, Manthabiseng, Molulela, Sematle, Mamoronts’ane P, Bane, Matumaole, Khomolishoele, Makhebe, Ikhetheleng, Leisa, Retselisitsoe, Lefokosane, Gupta, Ravi, McCrosky, Stephen, Lee, Tristan, Chammartin, Frederique, Weisser, Maja, Labhardt, Niklaus D, & . (2024). Prevalence of hepatitis B virus infection and treatment eligibility in Lesotho, Southern Africa: a population-based cross-sectional study with case-based follow-up [Journal-article]. BMJ Public Health, 2(2). https://doi.org/10.1136/bmjph-2024-001195
Jackson-Perry, David, Cart-Richter, Ellen, Haerry, David, Ahmeti, Lindrit, Bieri, Annatina, Calmy, Alexandra, Ballif, Marie, Pasin, Chloé, Notter, Julia, & . (2024). Patient and public involvement in HIV research: a mapping review and development of an online evidence map [Short Report]. Journal of the International AIDS Society, 27(11). https://doi.org/10.1002/jia2.26385
, Chammartin, Frédérique, Audigé, Annette, Eichenberger, Anna L., Braun, Dominique L., Amico, Patrizia, Stoeckle, Marcel P., Hasse, B., Papadimitriou-Olivgeris, Matthaios, Manuel, Oriol, Bongard, Cédric, Schuurmans, Macé, Hage, René, Damm, Dominik, Tamm, Michael, Mueller, Nicolas J., Rauch, A., Günthard, H.F., Koller, Michael T., et al. (2024). Antibody and T-Cell Response to Bivalent Booster SARS-CoV-2 Vaccines in People With Compromised Immune Function: COVERALL-3 Study. Journal of Infectious Diseases, 230(4), e847–e859. https://doi.org/10.1093/infdis/jiae291
, Schönenberger, Christof M., Speich, Benjamin, Griessbach, Alexandra, Schwenke, Johannes M., Glasstetter, Jan, James, Sophie, Verkooijen, Helena M., Nickolls, Beverley, Relton, Clare, Hemkens, Lars G., Chammartin, Frédérique, Gerber, Felix, Labhardt, Niklaus D., Schandelmaier, Stefan, & Briel, Matthias. (2024). Characteristics, consent patterns, and challenges of randomized trials using the Trials within Cohorts (TwiCs) design - A scoping review. Journal of Clinical Epidemiology, 174. https://doi.org/10.1016/j.jclinepi.2024.111469
Fernández, Lucia González, Firima, Emmanuel, Gupta, Ravi, Sematle, Mamoronts’ane Pauline, Khomolishoele, Makhebe, Molulela, Manthabiseng, Bane, Matumaole, Tlahali, Mosa, McCrosky, Stephen, Lee, Tristan, Chammartin, Frédérique, Seelig, Eleonora, Gerber, Felix, Lejone, Thabo Ishmael, Ayakaka, Irene, Labhardt, Niklaus Daniel, & . (2024). Awareness, treatment, and control among adults living with arterial hypertension or diabetes mellitus in two rural districts in Lesotho. PLOS Global Public Health, 4(9). https://doi.org/10.1371/journal.pgph.0003721
Manyara, Anthony Muchai, Davies, Philippa, Stewart, Derek, Weir, Christopher J, Young, Amber E, Blazeby, Jane, Butcher, Nancy J, Bujkiewicz, Sylwia, Chan, An-Wen, Dawoud, Dalia, Offringa, Martin, Ouwens, Mario, Hróbjartssson, Asbjørn, , Bertolaccini, Luca, Bruno, Vito Domenico, Devane, Declan, Faria, Christina D C M, Gilbert, Peter B, et al. (2024). Reporting of surrogate endpoints in randomised controlled trial protocols (SPIRIT-Surrogate): extension checklist with explanation and elaboration. Bmj, 384, 19. https://doi.org/10.1136/bmj-2023-078525
, Speich, Benjamin, Mentré, France, Rueegg, Corina Silvia, Belhadi, Drifa, Assoumou, Lambert, Burdet, Charles, Murthy, Srinivas, Dodd, Lori Elizabeth, Wang, Yeming, Tikkinen, Kari A O, Ader, Florence, Hites, Maya, Bouscambert, Maude, Trabaud, Mary Anne, Fralick, Mike, Lee, Todd C, Pinto, Ruxandra, Barratt-Due, Andreas, et al. (2023). Effects of remdesivir in patients hospitalised with COVID-19: a systematic review and individual patient data meta-analysis of randomised controlled trials. The Lancet Respiratory Medicine, 11(5), 453–464. https://doi.org/10.1016/s2213-2600(22)00528-8
Kopo, M., Lejone, T. I., Tschumi, N., Glass, T. R., Kao, M., Brown, J. A., Seiler, O., Muhairwe, J., Moletsane, N., Labhardt, N. D., & (2023). Effectiveness of a peer educator-coordinated preference-based differentiated service delivery model on viral suppression among young people living with HIV in Lesotho: the PEBRA cluster-randomized trial. PLOS Medicine, 20(1), e1004150. https://doi.org/10.1371/journal.pmed.1004150
, Lejone, T. I., Khesa, L., Kopo, M., Kao, M., Muhairwe, J., Bresser, M., Räber, F., Klimkait, T., Battegay, M., Glass, T. R., & Labhardt, N. D. (2021). Offering ART refill through community health workers versus clinic-based follow-up after home-based same-day ART initiation in rural Lesotho: the VIBRA cluster-randomized clinical trial. PLoS Medicine, 18(10), e1003839. https://doi.org/10.1371/journal.pmed.1003839
, Lejone, Thabo Ishmael, Khesa, Lefu, Muhairwe, Josephine, Bresser, Moniek, Vanobberghen, Fiona, Kopo, Mathebe, Kao, Mpho, Nsakala, Bienvenu Lengo, Tlali, Katleho, Klimkait, Thomas, Battegay, Manuel, Labhardt, Niklaus Daniel, & Glass, Tracy Renée. (2020). Home-based oral self-testing for absent and declining individuals during a door-to-door HIV testing campaign in rural Lesotho (HOSENG): a cluster-randomised trial. The Lancet HIV, 7(11), e752–e761. https://doi.org/10.1016/s2352-3018(20)30233-2
, Kopo, Mathebe, Lejone, Thabo I., Khesa, Lefu, Kao, Mpho, Muhairwe, Josephine, Glass, Tracy R., & Labhardt, Niklaus D. (2020). “If it is left, it becomes easy for me to get tested”: use of oral self-tests and community health workers to maximize the potential of home-based HIV testing among adolescents in Lesoth. Journal of the International AIDS Society, 23(Suppl 5), e25563. https://doi.org/10.1002/jia2.25563
, Nsakala, Bienvenu Lengo, Vanobberghen, Fiona, Muhairwe, Josephine, Glass, Tracy Renée, Namane, Tilo, Mpholo, Tlali, Battegay, Manuel, Klimkait, Thomas, & Labhardt, Niklaus Daniel. (2020). Switch to second-line versus continued first-line antiretroviral therapy for patients with low-level HIV-1 viremia: an open-label randomized controlled trial in Lesotho. PLoS medicine, 17(9), e1003325. https://doi.org/10.1371/journal.pmed.1003325
, Brown, Jennifer Anne, Ringera, Isaac, Muhairwe, Josephine, Lejone, Thabo Ishmael, Klimkait, Thomas, Glass, Tracy Renée, & Labhardt, Niklaus Daniel. (2019). Engagement in care, viral suppression, drug resistance and reasons for non-engagement after home-based same-day ART initiation in Lesotho: a two-year follow-up of the CASCADE trial. Clinical Infectious Diseases, 71(10), 2608–2614. https://doi.org/10.1093/cid/ciz1126
Labhardt, N. D., Ringera, I., Lejone, T. I., Klimkait, T., Muhairwe, J., , & Glass, T. R. (2018). Effect of offering same-day ART vs usual health facility referral during home-based HIV testing on linkage to care and viral suppression among adults with HIV in Lesotho : the CASCADE randomized clinical trial. JAMA : The Journal of the American Medical Association, 319(11), 1103–1112. https://doi.org/10.1001/jama.2018.1818
, Schandelmaier S, Frei R, Surina J, Agarwal A, Olu KK, Alturki R, Von Niederhäusern B, Von Elm E, & Briel M. (2017). Discontinuation and non-publication of randomised clinical trials supported by the main public funding body in Switzerland: A retrospective cohort study. BMJ Open, 7(7), e016216. https://doi.org/10.1136/bmjopen-2017-016216
Kasenda, Benjamin, von Elm, Erik, You, John, Blümle, Anette, Tomonaga, Yuki, Saccilotto, Ramon, , Bengough, Theresa, Meerpohl, Joerg J., Stegert, Mihaela, Tikkinen, Kari A. O., Neumann, Ignacio, Carrasco-Labra, Alonso, Faulhaber, Markus, Mulla, Sohail M., Mertz, Dominik, Akl, Elie A., Bassler, Dirk, Busse, Jason W., et al. (2014). Prevalence, characteristics, and publication of discontinued randomized trials. Journal of the American Medical Association, 311(10), 51–1045. https://doi.org/10.1001/jama.2014.1361
Selected Projects & Collaborations
ComBaCaL: Community-based Chronic Care Lesotho
Research Project | 14 Project Members
Community Based Chronic Care Lesotho (ComBaCaL) is a collaborative program between Lesotho and Switzerland dedicated to developing, testing, and sharing innovative solutions to enhance chronic disease care in remote settings in low- and middle-income countries.
At the core of ComBaCaL is the concept of Community Health Workers (CHWs) supported by a digital clinical decision support system, enabling them to provide treatment for selected conditions in remote areas with limited access to clinics.
In phase 1, we empowered CHWs to independently prescribe and manage treatment of uncomplicated hypertension and type 2 diabetes. This approach was effective in large cluster-randomised trials.
In the current phase 2, the focus has expanded to integrated care packages addressing a wider range of conditions, including HIV, sexual and reproductive health, and health services for children under five. The aim of this phase is to prepare ComBaCaL for scale.
For detailed information and a comprehensive list of our publications, visit: www.combacal.org.
EU-RESPONSE
Research Networks (Institutional Membership) | 3 Project Members
EU-RESPONSE is a 5-year project that includes two European Adaptive Platform Trials: DisCoVeRy and EU-SolidAct. The EU-RESPONSE consortium is composed of 22 partners, bringing together multidisciplinary partners from across the continent.
The group at the Division of Clinical Epidemiology is part of the methods and statistical group and co-leads specific meta-research projects such as several individual participant data meta-analyses (IPDMAs).
So war, we have conducted two large-scale IPDMAs to summarise all available randomised evidence on a) remdesivir and b) JAK inhibitors among hospitalised COVID-19 patients. Both IPDMAs contained more than >10'000 randomized patient data from more than 10 trial teams. The remdesivir IPDMA was published in The Lancet Respiratory Medicine, directly influenced the NICE guidelines in the UK, received high media attention, was cited in two editorials, and presented at the prestigious CROI conference 2023. The JAK inhibitor IPDMA (https://www.jakinhibitoripdma.org/) is currently under review at The Lancet Resp Med and in discussion at the WHO COVID-19 guidelines team for the upcoming update of their treatment guidelines.