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Tailor-Made Proteins and Peptides for Quantum Interference Experiments

Research Project
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01.01.2015
 - 31.12.2018

Tailor-Made Proteins and Peptides for Quantum Interference Experiments In recent years synthetic chemistry and quantum optics have teamed up with three major objectives in mind and are now in an encouraging position for the inclusion of molecular biology: 1 st : we face the open research challenge to test the linearity of quantum mechanics in the regime of high masses - and with it the concepts of quantum delocalization, quantum superposition and matter-wave interference. Matter-wave interferometry creates refined molecular nanopatterns that are sensitive to external fields and can be used to retrieve internal molecular properties in the presence of known forces. In the past, this has allowed us to determine molecular polarizabilities, vibrationally induced dipole moments, molecular fragmentation or to distinguish structural isomers. 3 rd : by carefully tailoring the molecular properties we were able to demonstrate the evolution of the diffraction pattern molecule by molecule and thus to unambiguously demonstrate the wave nature of the moving molecular particle. We aim to translate these achievements with tailor-made molecules into the world of biomolecular physics. Quantum experiments are expected to be compatible with neutral biomolecular beams that stay beyond a momentum of p=30.000 amu×30m/s. A key challenge is to generate a beam of slow, directed, velocity and mass-selected biomolecules in high vacuum. Peripheral chemical functionalization with perfluoroalkyl chains has proven to facilitate the promotion of intact massive molecules via thermal and laser assisted desorption methods. In this interdisciplinary approach between synthetic chemistry and bio-engineering, we propose the stepwise development of amino-acid based biomolecules for interference experiments. While the design and synthesis of these model compounds is based within the SNI at the University of Basel, the investigation of their physical properties is performed in close cooperation with the group of Markus Arndt at the University of Vienna. With the final goal of proving the wave nature of proteins, the initial challenges are mainly of chemical and biochemical nature. In particular we aim at the stepwise development of biomolecules with increasing size for interference experiments. Starting with small peptides, their volatilization (suitability for slow molecular beam formation) and ionization (detection after scattering) features shall be optimized. Profiting from these small bio-oligomers as proxy, we subsequently apply the design principles to bio-polymers of increasing size and hope to be able to push the mass limit up to suitably functionalized proteins. The sublimability of molecules is increased by reducing their intermolecular interactions and thus, peptides exposing fluorinated groups are at the focus of interest. As a starting point, lysine rich model peptides were selected for the decoration with fluorous tags. The exposed primary amino group of lysine is ideally suited for post-functionalization. Suitable electrophiles (e.g. NHS esters) enable the peripheral functionalization with groups exposing fluorous alkyl chains. The complementary conversion of carboxylic residues further permits the introduction of a photo-ionizable label to facilitate the peptide's detection by mass spectrometry. Initially we would like to investigate the number of peripheral perfluorinated alkyl groups required for the volatilization of model peptides. The modular assembly of peptides is ideally suited to study the correlation between their molecular mass and number of fluorous chains required. The features introduced by the tag can also be combined for example with a porphyrin tag exposing long perfluorinated alkyl chain. Of particular interest are photo-cleavable tags which enable future interference experiments based on optical gratings. The developed technology will subsequently be adapted to surface engineered proteins. Heterologous expression in E. coli allows control of surface residue composition by technically facile site directed mutagenesis. The outlined bio-chemical approach of protein modification also enables the global manipulation of surface charges, a particular important feature as only neutral bio-molecules are suited for interference experiments. To what extent these manipulations will interfere with the folding of the protein core will be subject of the here performed investigations. [1] S. Eibenberger, S. Gerlich, M. Arndt, M, Mayor, J. Tüxen, PhysChemPhys 2013 , 15 , 14696 [2] S. Gerlich, S. Eibenberger, M. Tomandl, S. Nimmrichter, K. Hornberger, P. Fagan, J. Tüxen, M. Mayor, M. Arndt, Nature Commun . 2011 , 2 , 263. [3] T. Juffmann, A. Milic, M. Müllneritsch, P. Asenbaum, A. Tsukernik, J. Tüxen, M. Mayor, O. Cheshnovsky, M. Arndt, Nature Nanotech. 2012 , 7 , 297. [4] P. Schmid, F. Stöhr, M. Arndt, J. Tüxen, M. Mayor, J. Am. Soc. Mass Spectr . 2013 , 24 , 602

Publications

Schätti, Jonas et al. (2020) ‘Matter-wave interference and deflection of tripeptides decorated with fluorinated alkyl chains’, Journal of Mass Spectrometry, 55(6), p. e4514. Available at: https://doi.org/10.1002/jms.4514.

URLs
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Schätti, Jonas et al. (2019) ‘Neutralization of insulin by photocleavage under high vacuum’, Chemical Communications, 55(83), pp. 12507–12510. Available at: https://doi.org/10.1039/c9cc05712a.

URLs
URLs

Debiossac, M. et al. (2018) ‘Tailored photocleavable peptides: fragmentation and neutralization pathways in high vacuum’, Physical Chemistry Chemical Physics, 20(16), pp. 11412–11417. Available at: https://doi.org/10.1039/c8cp01058g.

URLs
URLs

Schatti, J. et al. (2017) ‘Tailoring the volatility and stability of oligopeptides’, Journal of Mass Spectrometry, 52(8), pp. 550–556. Available at: https://doi.org/10.1002/jms.3959.

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URLs

Members (3)

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Valentin Köhler

Principal Investigator
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Marcel Mayor

Co-Investigator
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Jonas Schätti

Project Member