
The SWISS-MODEL expert system for comparative protein structure modeling
Research Project | 01.01.2000 - 31.12.2025
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01.01.2000
- 31.12.2025
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Collaborations & Cooperations
2011 - Participation or Organization of Collaborations on a national level
von Mering, Christian, University of Zürich, Exchange of methods
Publications
Bienert, Stefan et al. (2017) ‘The SWISS-MODEL Repository - new features and functionality’, Nucleic Acids Research, 45(D1), pp. D313–D319. Available at: https://doi.org/10.1093/nar/gkw1132.
Bienert, Stefan et al. (2017) ‘The SWISS-MODEL Repository - new features and functionality’, Nucleic Acids Research, 45(D1), pp. D313–D319. Available at: https://doi.org/10.1093/nar/gkw1132.
Biasini, Marco et al. (2014) ‘SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information’, Nucleic Acids Research, 42(Web Server issue), pp. W252–8. Available at: https://doi.org/10.1093/nar/gku340.
Biasini, Marco et al. (2014) ‘SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information’, Nucleic Acids Research, 42(Web Server issue), pp. W252–8. Available at: https://doi.org/10.1093/nar/gku340.
Schmidt, Tobias, Bergner, Andreas and Schwede, Torsten (2014) ‘Modelling three-dimensional protein structures for applications in drug design’, Drug discovery today, 19(7), pp. 890–7. Available at: https://doi.org/10.1016/j.drudis.2013.10.027.
Schmidt, Tobias, Bergner, Andreas and Schwede, Torsten (2014) ‘Modelling three-dimensional protein structures for applications in drug design’, Drug discovery today, 19(7), pp. 890–7. Available at: https://doi.org/10.1016/j.drudis.2013.10.027.
Biasini, M et al. (2013) ‘OpenStructure : an integrated software framework for computational structural biology’, Acta crystallographica. Section D, Biological crystallography, 69(Pt 5), pp. 701–9. Available at: https://doi.org/10.1107/s0907444913007051.
Biasini, M et al. (2013) ‘OpenStructure : an integrated software framework for computational structural biology’, Acta crystallographica. Section D, Biological crystallography, 69(Pt 5), pp. 701–9. Available at: https://doi.org/10.1107/s0907444913007051.
Schwede, Torsten (2013) ‘Protein modeling: what happened to the ‘protein structure gap’?’, Structure: with folding and design, 21(9), pp. 1531–1540. Available at: https://doi.org/10.1016/j.str.2013.08.007.
Schwede, Torsten (2013) ‘Protein modeling: what happened to the ‘protein structure gap’?’, Structure: with folding and design, 21(9), pp. 1531–1540. Available at: https://doi.org/10.1016/j.str.2013.08.007.
Schwede, Torsten (2013) ‘Homology Modeling of Protein Structures’, Encyclopedia of Biophysics. Edited by Roberts, G.C.K. Berlin: Springer (Encyclopedia of Biophysics). Available at: https://doi.org/10.1007/978-3-642-16712-6_417.
Schwede, Torsten (2013) ‘Homology Modeling of Protein Structures’, Encyclopedia of Biophysics. Edited by Roberts, G.C.K. Berlin: Springer (Encyclopedia of Biophysics). Available at: https://doi.org/10.1007/978-3-642-16712-6_417.
Barbato, Alessandro et al. (2012) ‘Improving your target-template alignment with MODalign’, Bioinformatics, 28(7), pp. 1038–9. Available at: https://doi.org/10.1093/bioinformatics/bts070.
Barbato, Alessandro et al. (2012) ‘Improving your target-template alignment with MODalign’, Bioinformatics, 28(7), pp. 1038–9. Available at: https://doi.org/10.1093/bioinformatics/bts070.
Bordoli, Lorenza and Schwede, Torsten (2012) ‘Automated Protein Structure Modeling with SWISS-MODEL Workspace and the Protein Model Portal’, in Orry, Andrew JW; Abagyan, Ruben (ed.) Homology Modeling: Methods and Protocols. New York, USA: Humana Press (Methods in Molecular Biology), p. S. 107–36. Available at: https://doi.org/10.1007/978-1-61779-588-6_5.
Bordoli, Lorenza and Schwede, Torsten (2012) ‘Automated Protein Structure Modeling with SWISS-MODEL Workspace and the Protein Model Portal’, in Orry, Andrew JW; Abagyan, Ruben (ed.) Homology Modeling: Methods and Protocols. New York, USA: Humana Press (Methods in Molecular Biology), p. S. 107–36. Available at: https://doi.org/10.1007/978-1-61779-588-6_5.
Benkert, Pascal, Biasini, Marco and Schwede, Torsten (2011) ‘Toward the estimation of the absolute quality of individual protein structure models’, Bioinformatics, 27(3), pp. 343–50. Available at: https://doi.org/10.1093/bioinformatics/btq662.
Benkert, Pascal, Biasini, Marco and Schwede, Torsten (2011) ‘Toward the estimation of the absolute quality of individual protein structure models’, Bioinformatics, 27(3), pp. 343–50. Available at: https://doi.org/10.1093/bioinformatics/btq662.
Haas, J. and Schwede, T. (2010) ‘Protein Homology Modelling - Providing Three-dimensional Models for Proteins where Experimental Data is Missing’, ERCIM News, 82, pp. 20–21. Available at: http://ercim-news.ercim.eu/images/stories/EN82/EN82-web.pdf.
Haas, J. and Schwede, T. (2010) ‘Protein Homology Modelling - Providing Three-dimensional Models for Proteins where Experimental Data is Missing’, ERCIM News, 82, pp. 20–21. Available at: http://ercim-news.ercim.eu/images/stories/EN82/EN82-web.pdf.
Bordoli, Lorenza et al. (2009) ‘Protein structure homology modelling using SWISS-MODEL Workspace’, Nature Protocols, 4(1), pp. 1–13. Available at: https://doi.org/10.1038/nprot.2008.197.
Bordoli, Lorenza et al. (2009) ‘Protein structure homology modelling using SWISS-MODEL Workspace’, Nature Protocols, 4(1), pp. 1–13. Available at: https://doi.org/10.1038/nprot.2008.197.
Guex, Nicolas, Peitsch, Manuel C and Schwede, Torsten (2009) ‘Automated comparative protein structure modeling with Swiss-model and Swiss-PdbViewer : a historical perspective’, Electrophoresis, 30 Suppl 1(S1), pp. S162–73. Available at: https://doi.org/10.1002/elps.200900140.
Guex, Nicolas, Peitsch, Manuel C and Schwede, Torsten (2009) ‘Automated comparative protein structure modeling with Swiss-model and Swiss-PdbViewer : a historical perspective’, Electrophoresis, 30 Suppl 1(S1), pp. S162–73. Available at: https://doi.org/10.1002/elps.200900140.
Kiefer, F. et al. (2009) ‘The Swiss-model Repository and associated resources’, Nucleic Acids Research, 37(1 Supplement), pp. D387–D392. Available at: https://doi.org/10.1093/nar/gkn750.
Kiefer, F. et al. (2009) ‘The Swiss-model Repository and associated resources’, Nucleic Acids Research, 37(1 Supplement), pp. D387–D392. Available at: https://doi.org/10.1093/nar/gkn750.
Schwede, T. and Peitsch, M. C. (2009) ‘Protein Structure Modeling and Docking at the Swiss Institute of Bioinformatics’, in Appel, RD; Feytmans, E. (ed.) Bioinformatics. A Swiss Perspective. New Jersey: World Scientific (Bioinformatics. A Swiss Perspective), p. S. 219–246. Available at: https://doi.org/10.1142/9789812838780_0009.
Schwede, T. and Peitsch, M. C. (2009) ‘Protein Structure Modeling and Docking at the Swiss Institute of Bioinformatics’, in Appel, RD; Feytmans, E. (ed.) Bioinformatics. A Swiss Perspective. New Jersey: World Scientific (Bioinformatics. A Swiss Perspective), p. S. 219–246. Available at: https://doi.org/10.1142/9789812838780_0009.
Schwede, T. et al. (2008) ‘Protein Structure Modeling’, in Schwede, T.; Peitsch, M.C. (ed.) Computational structural biology. Singapore: World Scientific (Computational structural biology), p. S. 700. Available at: https://doi.org/10.1142/9789812778789_0001.
Schwede, T. et al. (2008) ‘Protein Structure Modeling’, in Schwede, T.; Peitsch, M.C. (ed.) Computational structural biology. Singapore: World Scientific (Computational structural biology), p. S. 700. Available at: https://doi.org/10.1142/9789812778789_0001.
Arnold, Konstantin et al. (2006) ‘The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling’, Bioinformatics, 22(2), pp. 195–201. Available at: https://doi.org/10.1093/bioinformatics/bti770.
Arnold, Konstantin et al. (2006) ‘The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling’, Bioinformatics, 22(2), pp. 195–201. Available at: https://doi.org/10.1093/bioinformatics/bti770.
Kopp, Jürgen and Schwede, Torsten (2006) ‘The Swiss-model Repository : new features and functionalities’, Nucleic Acids Research, 34(Database issue), pp. D315–8. Available at: https://doi.org/10.1093/nar/gkj056.
Kopp, Jürgen and Schwede, Torsten (2006) ‘The Swiss-model Repository : new features and functionalities’, Nucleic Acids Research, 34(Database issue), pp. D315–8. Available at: https://doi.org/10.1093/nar/gkj056.
Kopp, J. and Schwede, T. (2004) ‘The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models’, Nucleic Acids Research, 32(1 Supplement), pp. D230–D234. Available at: https://doi.org/10.1093/nar/gkh008.
Kopp, J. and Schwede, T. (2004) ‘The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models’, Nucleic Acids Research, 32(1 Supplement), pp. D230–D234. Available at: https://doi.org/10.1093/nar/gkh008.
Kopp, Jurgen and Schwede, Torsten (2004) ‘Automated protein structure homology modeling : a progress report’, Pharmacogenomics, 5(4), pp. 405–16. Available at: https://doi.org/10.1517/14622416.5.4.405.
Kopp, Jurgen and Schwede, Torsten (2004) ‘Automated protein structure homology modeling : a progress report’, Pharmacogenomics, 5(4), pp. 405–16. Available at: https://doi.org/10.1517/14622416.5.4.405.
Schwede, T. et al. (2003) ‘Swiss-model : an automated protein homology-modeling server’, Nucleic Acids Research, 31(13), pp. 3381–5. Available at: https://doi.org/10.1093/nar/gkg520.
Schwede, T. et al. (2003) ‘Swiss-model : an automated protein homology-modeling server’, Nucleic Acids Research, 31(13), pp. 3381–5. Available at: https://doi.org/10.1093/nar/gkg520.
Peitsch, M.C. et al. (2002) ‘Protein homology modeling’, Nature encyclopedia of the human genome, 4.
Peitsch, M.C. et al. (2002) ‘Protein homology modeling’, Nature encyclopedia of the human genome, 4.
Kopp, J., Peitsch, M. C. and Schwede, T. (2002) ‘Protein Structure Modeling in Functional Genomics’, in Frontiers in Computational Genomics. Horizon Scientific Press: Horizon Scientific Press (Frontiers in Computational Genomics). Available at: http://books.google.com/books?id=hJ79LFI7f_IC&printsec=frontcover&dq=frontiers+in+computational+genomics#PPA89,M1.
Kopp, J., Peitsch, M. C. and Schwede, T. (2002) ‘Protein Structure Modeling in Functional Genomics’, in Frontiers in Computational Genomics. Horizon Scientific Press: Horizon Scientific Press (Frontiers in Computational Genomics). Available at: http://books.google.com/books?id=hJ79LFI7f_IC&printsec=frontcover&dq=frontiers+in+computational+genomics#PPA89,M1.
Peitsch, M C, Schwede, T and Guex, N (2000) ‘Automated protein modelling-the proteome in 3D’, Pharmacogenomics, 1(3), pp. 257–66. Available at: https://doi.org/10.1517/14622416.1.3.257.
Peitsch, M C, Schwede, T and Guex, N (2000) ‘Automated protein modelling-the proteome in 3D’, Pharmacogenomics, 1(3), pp. 257–66. Available at: https://doi.org/10.1517/14622416.1.3.257.
Schwede, T et al. (2000) ‘Protein structure computing in the genomic era’, Research in microbiology, 151(2), pp. 107–12. Available at: https://doi.org/10.1016/s0923-2508(00)00121-2.
Schwede, T et al. (2000) ‘Protein structure computing in the genomic era’, Research in microbiology, 151(2), pp. 107–12. Available at: https://doi.org/10.1016/s0923-2508(00)00121-2.
Guex, N., Schwede, T. and Peitsch, M. C. (2000) ‘Protein Tertiary Structure Modeling’, in Current Protocols in Protein Science. [New York]: Wiley (Current Protocols in Protein Science), p. 2.8.1–2.8.17. Available at: https://doi.org/10.1002/0471140864.ps0208s23.
Guex, N., Schwede, T. and Peitsch, M. C. (2000) ‘Protein Tertiary Structure Modeling’, in Current Protocols in Protein Science. [New York]: Wiley (Current Protocols in Protein Science), p. 2.8.1–2.8.17. Available at: https://doi.org/10.1002/0471140864.ps0208s23.