Prof. Dr. Oliver Bieri

Herger, Simon, Wirth, Wolfgang, Nüesch, Corina, Oliver, Bieri, Egloff, Christian, Eckstein, Felix, & Mündermann, Annegret. (2025). 2-YEAR LONGITUDINAL CHANGES IN KNEE CARTILAGE THICKNESS AND TRANSVERSE RELAXATION TIME (T2) IN ACL-INJURED VERSUS HEALTY PARTICIPANTS. Osteoarthritis and Cartilage, 33, S298. https://doi.org/10.1016/j.joca.2025.02.420

Wirth, Wolfgang, Herger, Simon, Maschek, Susanne, Wisser, Anna, Bieri, Oliver, Eckstein, Felix, & Mündermann, Annegret. (2025). Clinical validation of fully automated cartilage transverse relaxation time (T2) and thickness analysis using quantitative DESS magnetic resonance imaging [Journal-article]. Magnetic Resonance Materials in Physics, Biology and Medicine, 38(2), 285–297. https://doi.org/10.1007/s10334-025-01227-5

Wirth, Wolfgang, Herger, Simon, Maschek, Susanne, Wisser, Anna, Oliver, Bieri, Eckstein, Felix, & Mündermann, Annegret. (2025). CLINICAL VALIDATION OF FULLY AUTOMATED CARTILAGE TRANSVERSE RELAXATION TIME (T2) AND THICKNESS ANALYSIS USING QUANTITATIVE DESS MAGNETIC RESONANCE IMAGING. Osteoarthritis and Cartilage, 33, S283–S284. https://doi.org/10.1016/j.joca.2025.02.403

Nagy, Sara, Kubassova, Olga, Hafner, Patricia, Schädelin, Sabine, Schmidt, Simone, Sinnreich, Michael, Schröder, Jonas, Bieri, Oliver, Boesen, Mikael, & Fischer, Dirk. (2025). Automated analysis of quantitative muscle MRI and its reliability in patients with Duchenne muscular dystrophy. Journal of Neuromuscular Diseases. https://doi.org/10.1177/22143602251319184

Weigel, M., Celicanin, Z., Haas, T., & Bieri, O. (2024). Feasibility of interleaved multislice averaged magnetization inversion-recovery acquisitions of the spinal cord [Journal-article]. Magnetic Resonance in Medicine, 92(6), 2588–2595. https://doi.org/10.1002/mrm.30223

Bieri, Oliver, Weidensteiner, Claudia, & Ganter, Carl. (2024). Robust T2 estimation with balanced steady state free precession [Journal-article]. Magnetic Resonance in Medicine, 91(6), 2257–2265. https://doi.org/10.1002/mrm.30037

Streibel, C., Willers, C. C., Bauman, G., Pusterla, O., Bieri, O., Curdy, M., Horn, M., Casaulta, C., Berger, S., Dekany, G. M., Kieninger, E., Bartenstein, A., & Latzin, P. (2024). Long-term pulmonary outcome of children with congenital diaphragmatic hernia: functional lung MRI using matrix-pencil decomposition enables side-specific assessment of lung function [Journal-article]. European Radiology, 34(6), 3773–3785. https://doi.org/10.1007/s00330-023-10395-8

Wendebourg, Maria Janina, Weigel, Matthias, Weidensteiner, Claudia, Sander, Laura, Kesenheimer, Eva, Naumann, Nicole, Haas, Tanja, Madoerin, Philipp, Braun, Nathalie, Neuwirth, Christoph, Weber, Markus, Jahn, Kathleen, Kappos, Ludwig, Granziera, Cristina, Schweikert, Kathi, Sinnreich, Michael, Bieri, Oliver, & Schlaeger, Regina. (2024). Cervical and thoracic spinal cord gray matter atrophy is associated with disability in patients with amyotrophic lateral sclerosis [Journal-article]. European Journal of Neurology, 31(6). https://doi.org/10.1111/ene.16268

Wendebourg, Maria Janina, Weigel, Matthias, Weidensteiner, Claudia, Sander, Laura, Kesenheimer, Eva, Naumann, Nicole, Haas, Tanja, Madoerin, Philipp, Braun, Nathalie, Neuwirth, Christoph, Weber, Markus, Jahn, Kathleen, Kappos, Ludwig, Granziera, Cristina, Schweikert, Kathi, Sinnreich, Michael, Bieri, Oliver, & Schlaeger, Regina. (2024). Cervical and thoracic spinal cord gray matter atrophy is associated with disability in patients with amyotrophic lateral sclerosis. European Journal of Neurology, 31(6). https://doi.org/10.1111/ene.16268

Wendebourg, Maria Janina, Weigel, Matthias, Weidensteiner, Claudia, Sander, Laura, Kesenheimer, Eva, Naumann, Nicole, Haas, Tanja, Madoerin, Philipp, Braun, Nathalie, Neuwirth, Christoph, Weber, Markus, Jahn, Kathleen, Kappos, Ludwig, Granziera, Cristina, Schweikert, Kathi, Sinnreich, Michael, Bieri, Oliver, & Schlaeger, Regina. (2024). Cervical and thoracic spinal cord gray matter atrophy is associated with disability in patients with amyotrophic lateral sclerosis [Journal-article]. European Journal of Neurology, 31(6). https://doi.org/10.1111/ene.16268

Lee, N. G., Bauman, G., Bieri, O., & Nayak, K. S. (2024). Replication of the bSTAR sequence and open-source implementation [Journal-article]. Magnetic Resonance in Medicine, 91(4), 1464–1477. https://doi.org/10.1002/mrm.29947

Gloor, Monika, Andelova, Michaela, Gaetano, Laura, Papadopoulou, Athina, Burguet Villena, Federico, Sprenger, Till, Radue, Ernst-Wilhelm, Kappos, Ludwig, Bieri, Oliver, & Garcia, Meritxell. (2024). Longitudinal analysis of new multiple sclerosis lesions with magnetization transfer and diffusion tensor imaging. European Radiology, 34(3), 1680–1691. https://doi.org/10.1007/s00330-023-10173-6

Schäper, Jessica, & Bieri, Oliver. (2024). Myelin water imaging at 0.55 T using a multigradient-echo sequence. Magnetic Resonance in Medicine, 91(3), 1043–1056. https://doi.org/10.1002/mrm.29949

Schäper, Jessica, & Bieri, Oliver. (2024). Myelin water imaging at 0.55 T using a multigradient-echo sequence [Journal-article]. Magnetic Resonance in Medicine, 91(3), 1043–1056. https://doi.org/10.1002/mrm.29949

Doellinger, Felix, Bauman, Grzegorz, Roehmel, Jobst, Stahl, Mirjam, Posch, Helena, Steffen, Ingo G., Pusterla, Orso, Bieri, Oliver, Wielpütz, Mark O., & Mall, Marcus A. (2024). Contrast agent-free functional magnetic resonance imaging with matrix pencil decomposition to quantify abnormalities in lung perfusion and ventilation in patients with cystic fibrosis. Frontiers in Medicine, 11. https://doi.org/10.3389/fmed.2024.1349466

McGrath, Charles, Bieri, Oliver, Kozerke, Sebastian, & Bauman, Grzegorz. (2024). Self-gated cine phase-contrast balanced SSFP flow quantification at 0.55 T. Magnetic Resonance in Medicine, 91(1), 174–189. https://doi.org/10.1002/mrm.29837

Schäper, Jessica, Bauman, Grzegorz, & Bieri, Oliver. (2024). Improved gray-white matter contrast using magnetization prepared fast imaging with steady-state free precession (MP-FISP) brain imaging at 0.55 T. Magnetic Resonance in Medicine, 91(1), 162–173. https://doi.org/10.1002/mrm.29838

Schneider, Else, Rajkovic, Marko, Krug, Rudolf, Caviezel, Marco P., Reichert, Carolin F., Bieri, Oliver, Schmidt, André, Borgwardt, Stefan, Leyhe, Thomas, Linnemann, Christoph, Brühl, Annette B., Lang, Undine E., & Melcher, Tobias. (2024). Aging effects on the encoding/retrieval flip in associative memory: fMRI evidence from incidental contingency learning. Frontiers in Aging Neuroscience, 16. https://doi.org/10.3389/fnagi.2024.1357695

Mumme, M., Wixmerten, A., Ivkovic, A., Peretti, G. M., Yilmaz, T., Reppenhagen, S., Pullig, O., Miot, S., Jakob, M., Mangiavini, L., Sosio, C., Bieri, O., Biguzzi, S., Gahl, B., Lehoczky, G., Vukojevic, R., Häusner, S., Gryadunova, A., Haug, M., et al. (2024). Engineered Cartilage from Nasal Chondrocytes for Knee Repair: Clinical Relevance of Tissue Maturation in a Randomized, Multicenter Phase 2 Trial [Posted-content]. Elsevier BV. https://doi.org/10.2139/ssrn.4797651

Bordier, Valentine, Teysseire, Fabienne, Drewe, Jürgen, Madörin, Philipp, Bieri, Oliver, Schmidt-Trucksäss, Arno, Hanssen, Henner, Beglinger, Christoph, Meyer-Gerspach, Anne Christin, & Wölnerhanssen, Bettina K. (2023). Effects of a 5-week intake of erythritol and xylitol on vascular function, abdominal fat and glucose tolerance in humans with obesity: A pilot trial. BMJ Nutrition, Prevention and Health, 6(2), 264–272. https://doi.org/10.1136/bmjnph-2023-000764

Bauman, Grzegorz, Lee, Nam G., Tian, Ye, Bieri, Oliver, & Nayak, Krishna S. (2023). Submillimeter lung MRI at 0.55 T using balanced steady-state free precession with half-radial dual-echo readout (bSTAR). Magnetic Resonance in Medicine, 90(5), 1949–1957. https://doi.org/10.1002/mrm.29757

Maushart, Claudia Irene, Sun, Wenfei, Othman, Alaa, Ghosh, Adhideb, Senn, Jaël Rut, Fischer, Jonas Gabriel William, Madoerin, Philipp, Loeliger, Rahel Catherina, Benz, Robyn Melanie, Takes, Martin, Zech, Christoph Johannes, Chirindel, Alin, Beuschlein, Felix, Reincke, Martin, Wild, Damian, Bieri, Oliver, Zamboni, Nicola, Wolfrum, Christian, & Betz, Matthias Johannes. (2023). Effect of high-dose glucocorticoid treatment on human brown adipose tissue activity: a randomised, double-blinded, placebo-controlled cross-over trial in healthy men. eBioMedicine, 96. https://doi.org/10.1016/j.ebiom.2023.104771

Weidensteiner, C., Deligianni, X., Haas, T., Madoerin, P., Bieri, O., Garcia, M., Romkes, J., Rutz, E., Santini, F., & Brunner, R. (2023). Cine phase contrast magnetic resonance imaging of calf muscle contraction in pediatric patients with cerebral palsy and healthy children: comparison of voluntary motion and electrically evoked motion [Posted-content]. In medRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2023.08.02.23293313

Iyyakkunnel, Santhosh, Weigel, Matthias, Ganter, Carl, & Bieri, Oliver. (2023). Erratum to: Complex B 1+ mapping with Carr-Purcell spin echoes and its application to electrical properties tomography (Magnetic Resonance in Medicine, (2022), 87, 3, (1250-1260), 10.1002/mrm.29020). Magnetic Resonance in Medicine, 90(2), 802. https://doi.org/10.1002/mrm.29701

Streibel C, Willers CC, Pusterla O., Bauman G, Stranzinger E, Brabandt B., Bieri O., Curdy M, Bullo M., Frauchiger BS, Korten I, Kruger L., Casaulta C, Ratjen F., Latzin P., & Kieninger E. (2023). Effects of elexacaftor/tezacaftor/ivacaftor therapy in children with cystic fibrosis – a comprehensive assessment using lung clearance index, spirometry, and functional and structural lung MRI. Journal of Cystic Fibrosis, 22(4), 615–622. https://doi.org/10.1016/j.jcf.2022.12.012

Kentgens, Anne-Christianne, Pusterla, Orso, Bauman, Grzegorz, Santini, Francesco, Wyler, Florian, Curdy, Marion S., Willers, C.Corin, Bieri, Oliver, Latzin, Philipp, & Ramsey, Kathryn A. (2023). Simultaneous multiple breath washout and oxygen-enhanced magnetic resonance imaging in healthy adults. Respiratory Medicine and Research, 83. https://doi.org/10.1016/j.resmer.2023.100993

Bieri O., Pusterla O., & Bauman G. (2023). Free-breathing half-radial dual-echo balanced steady-state free precession thoracic imaging with wobbling Archimedean spiral pole trajectories. Zeitschrift Fur Medizinische Physik, 33(2), 220–229. https://doi.org/10.1016/j.zemedi.2022.01.003

Tsagkas, Charidimos, Huck-Horvath, Antal, Cagol, Alessandro, Haas, Tanja, Barakovic, Muhamed, Amann, Michael, Ruberte, Esther, Melie-Garcia, Lester, Weigel, Matthias, Pezold, Simon, Schlaeger, Regina, Kuhle, Jens, Sprenger, Till, Kappos, Ludwig, Bieri, Oliver, Cattin, Philippe, Granziera, Cristina, & Parmar, Katrin. (2023). Anterior horn atrophy in the cervical spinal cord: A new biomarker in progressive multiple sclerosis. Multiple Sclerosis Journal, 29(6), 702–718. https://doi.org/10.1177/13524585221139152

Tsagkas, Charidimos, Huck-Horvath, Antal, Cagol, Alessandro, Haas, Tanja, Barakovic, Muhamed, Amann, Michael, Ruberte, Esther, Melie-Garcia, Lester, Weigel, Matthias, Pezold, Simon, Schlaeger, Regina, Kuhle, Jens, Sprenger, Till, Kappos, Ludwig, Bieri, Oliver, Cattin, Philippe, Granziera, Cristina, & Parmar, Katrin. (2023). Anterior horn atrophy in the cervical spinal cord: A new biomarker in progressive multiple sclerosis [Journal-article]. Multiple Sclerosis Journal, 29(6), 702–718. https://doi.org/10.1177/13524585221139152

Tsagkas, Charidimos, Huck-Horvath, Antal, Cagol, Alessandro, Haas, Tanja, Amann, Michael, Barakovic, Muhamed, Ruberte, Esther, Melie-Garcia, Lester, Weigel, Matthias, Pezold, Simon, Schlaeger, Regina, Kuhle, Jens, Sprenger, Till, Kappos, Ludwig, Bieri, Oliver, Cattin, Philippe, Granziera, Cristina, & Parmar, Katrin. (2023). Longitudinal assessment of cervical spinal cord compartments in multiple sclerosis [Journal-article]. Multiple Sclerosis and Related Disorders, 71, 104545. https://doi.org/10.1016/j.msard.2023.104545

Tsagkas C, Huck-Horvath A, Cagol A, Haas T, Amann M, Barakovic M, Ruberte E, Melie-Garcia L, Weigel M, Pezold S, Schlaeger R, Kuhle J, Sprenger T, Kappos L, Bieri O, Cattin P, Granziera C, & Parmar K. (2023). Longitudinal assessment of cervical spinal cord compartments in multiple sclerosis. Multiple Sclerosis and Related Disorders, 71, 104545. https://doi.org/10.1016/j.msard.2023.104545

Tsagkas, C., Horvath-Huck, A., Haas, T., Amann, M., Todea, A., Altermatt, A., Müller, J., Cagol, A., Leimbacher, M., Barakovic, M., Weigel, M., Pezold, S., Sprenger, T., Kappos, L., Bieri, O., Granziera, C., Cattin, P., & Parmar, K. (2023). Fully Automatic Method for Reliable Spinal Cord Compartment Segmentation in Multiple Sclerosis [Journal-article]. American Journal of Neuroradiology, 44(2), 218–227. https://doi.org/10.3174/ajnr.A7756

Afshari, Roya, Santini, Francesco, Heule, Rahel, Meyer, Craig H., Pfeuffer, Josef, & Bieri, Oliver. (2023). Rapid whole-brain quantitative MT imaging. Zeitschrift Fur Medizinische Physik, null. https://doi.org/10.1016/j.zemedi.2023.02.005

Bordier, Valentine, Teysseire, Fabienne, Drewe, Jürgen, Madörin, Philipp, Bieri, Oliver, Schmidt-Trucksäss, Arno, Hanssen, Henner, Beglinger, Christoph, Wölnerhanssen, Bettina, & Meyer-Gerspach, Anne Christin. (2023). Effects of a five-week intake of erythritol and xylitol on vascular function, abdominal fat, and glucose tolerance in humans with obesity: a pilot trial . BMJ Nutrition, Prevention & Health, 6(2). https://doi.org/10.1136/bmjnph-2023-000764

Hager B, Schreiner MM, Walzer SM, Hirtler L., Mlynarik V, Berg A, Deligianni X, Bieri O., Windhager R, Trattnig S, & Juras V. (2022). Transverse Relaxation Anisotropy of the Achilles and Patellar Tendon Studied by MR Microscopy. Journal of Magnetic Resonance Imaging, 56(4), 1091–1103. https://doi.org/10.1002/jmri.28095

Streibel, C., Willers, C. C., Pusterla, O., Bauman, G., Bieri, O., Stranzinger, E., Brabandt, B., Latzin, P., & Kieninger, E. (2022, September 4). Effect of ELX/TEZ/IVA treatment on lung ventilation in children with cystic fibrosis – comprehensive assessment using spirometry, MBW, structural and functional lung MRI [Proceedings-article]. https://doi.org/10.1183/13993003.congress-2022.3919

Nyilas S., Bauman G, Korten I, Pusterla O., Singer F, Ith M, Groen C, Schoeni A, Heverhagen JT, Christe A., Rodondi N, Bieri O., Geiser T, Auer R, Funke-Chambour M., & Ebner L. (2022). MRI Shows Lung Perfusion Changes after Vaping and Smoking. Radiology, 304(1), 195–204. https://doi.org/10.1148/radiol.211327

Pusterla O., Heule R., Santini F, Weikert T, Willers C., Andermatt S., Sandkuhler R., Nyilas S., Latzin P., Bieri O., & Bauman G. (2022). MRI lung lobe segmentation in pediatric cystic fibrosis patients using a recurrent neural network trained with publicly accessible CT datasets. Magnetic Resonance in Medicine, 88(1), 391–405. https://doi.org/10.1002/mrm.29184

Duetschler A, Bauman G, Bieri O., Cattin PC, Ehrbar S, Engin-Deniz G, Giger A., Josipovic M, Jud C., Krieger M, Nguyen D., Persson GF, Salomir R., Weber DC, Lomax AJ, & Zhang Y. (2022). Synthetic 4DCT(MRI) lung phantom generation for 4D radiotherapy and image guidance investigations. Medical Physics, 49(5), 2890–2903. https://doi.org/10.1002/mp.15591

Wendebourg MJ, Weigel M, Richter L, Gocheva V, Hafner P, Orsini A.-L., Crepulja V, Schmidt S, Huck A., Oechtering J., Blatow M, Haas T., Granziera C, Kappos L, Cattin P, Bieri O., Fischer D, & Schlaeger R. (2022). Spinal cord gray matter atrophy is associated with functional decline in post-polio syndrome. European Journal of Neurology, 29(5), 1435–1445. https://doi.org/10.1111/ene.15261

Schäper, Jessica, Bauman, Grzegorz, Ganter, Carl, & Bieri, Oliver. (2022). Pure balanced steady-state free precession imaging (pure bSSFP). Magnetic Resonance in Medicine, 87(4), 1886–1893. https://doi.org/10.1002/mrm.29086

Iyyakkunnel S., Weigel M., Ganter C., & Bieri O. (2022). Complex B1+ mapping with Carr-Purcell spin echoes and its application to electrical properties tomography. Magnetic Resonance in Medicine, 87(3), 1250–1260. https://doi.org/10.1002/mrm.29020

Harreld J.H., Zou P., Sabin N.D., Edwards A., Han Y., Li Y., Bieri O., Khan R.B., Gajjar A., Robinson G., & Merchant T.E. (2022). Pretreatment Normal WM Magnetization Transfer Ratio Predicts Risk of Radiation Necrosis in Patients with Medulloblastoma. American Journal of Neuroradiology, 43(2), 299–303. https://doi.org/10.3174/ajnr.a7393

Kieninger E, Willers C, Röthlisberger K, Yammine S, Pusterla O, Bauman G, Stranzinger E, Bieri O, Latzin P, & Casaulta C. (2022). Effect of salbutamol on lung ventilation in children with cystic fibrosis: Comprehensive assessment using spirometry, multiple-breath washout, and functional lung magnetic resonance imaging. Respiration, 101(3), 281–290. https://doi.org/10.1159/000519751

Soni, Kunal, Iyyakkunnel, Santhosh, Steiner, Roland, Antunes, Rodrigo, Moser, Lucas, Bieri, Oliver, Marot, Laurent, & Meyer, Ernst. (2022). Effect of 3 T magnetic field on RF plasma sputtering in an ITER-relevant first mirror unit. Nuclear Fusion, 62(12), 126009. https://doi.org/10.1088/1741-4326/ac8b20

Valk A., Willers C, Shahim K., Pusterla O, Bauman G, Sandkühler R, Bieri O., Wyler F., & Latzin P. (2021). Defect distribution index: A novel metric for functional lung MRI in cystic fibrosis. Magnetic Resonance in Medicine, 86(6), 3224–3235. https://doi.org/10.1002/mrm.28947

Putananickal N., Orsini A.-L., Schmidt S., Gocheva V, Rubino D., Haas T, Schadelin S., Deligianni X, Bieri O., Fischer D, & Hafner P. (2021). Treatment with L‐Citrulline in patients with post‐polio syndrome: A single center, randomized, double blind, placebo‐controlled trial. Neuromuscular Disorders, 31(11), 1136–1143. https://doi.org/10.1016/j.nmd.2021.08.011

Kentgens, A.-C., Pusterla, O., Pusterla, O., Pusterla, O., Pusterla, O., Bauman, G., Bauman, G., Santini, F., Santini, F., Willers, C. C., Bieri, O., Bieri, O., Latzin, P., & Ramsey, K. (2021, September 5). Simultaneous measurement of multiple breath washout and functional lung MRI [Proceedings-article]. https://doi.org/10.1183/13993003.congress-2021.pa3216

Willers, C. C., Frauchiger, B. S., Stranzinger, E., Bauman, G., Pusterla, O., Bieri, O., Ramsey, K., & Latzin, P. (2021, September 5). Change in functional lung MRI and multiple breath washout outcomes over one year in children with cystic fibrosis [Proceedings-article]. https://doi.org/10.1183/13993003.congress-2021.oa2675

Felisaz PF, Belatti E, Deligianni X, Bergsland N, Santini F, Paoletti M, Solazzo F, Germani G, Cortese A, Vegezzi E, Bieri O, Bastianello S, & Pichiecchio A. (2021). Variable echo time imaging for detecting the short T2* components of the sciatic nerve: a validation study. Magnetic Resonance Materials in Physics, Biology and Medicine, 34(3), 411–419. https://doi.org/10.1007/s10334-020-00886-w

Leontiev W, Bieri O., Madorin P., Dagassan-Berndt D, Kühl S, Krastl G., Krug R., Weiger R, & Connert T. (2021). Suitability of Magnetic Resonance Imaging for Guided Endodontics: Proof of Principle. Journal of Endodontics, 47(6), 954–960. https://doi.org/10.1016/j.joen.2021.03.011

Weidensteiner, Claudia, Madoerin, Philipp, Deligianni, Xeni, Haas, Tanja, Bieri, Oliver, Akinci D’Antonoli, Tugba, Bracht-Schweizer, Katrin, Romkes, Jacqueline, De Pieri, Enrico, Santini, Francesco, Rutz, Erich, Brunner, Reinald, & Garcia, Meritxell. (2021). Quantification and Monitoring of the Effect of Botulinum Toxin A on Paretic Calf Muscles of Children With Cerebral Palsy With MRI: A Preliminary Study [Journal-article]. Frontiers in Neurology, 12. https://doi.org/10.3389/fneur.2021.630435

Weidensteiner C, Madoerin P, Deligianni X, Haas T, Bieri O, Akinci D’Antonoli T, Bracht-Schweizer K, Romkes J, De Pieri E, Santini F, Rutz E, Brunner R, & Garcia M. (2021). Quantification and Monitoring of the Effect of Botulinum Toxin A on Paretic Calf Muscles of Children With Cerebral Palsy With MRI: A Preliminary Study. Frontiers in Neurology, 12, 630435. https://doi.org/10.3389/fneur.2021.630435

Kesenheimer EM, Wendebourg MJ, Weigel M, Weidensteiner C, Haas T, Richter L, Sander L, Horvath A, Barakovic M, Cattin P, Granziera C, Bieri O, & Schlaeger R. (2021). Normalization of Spinal Cord Total Cross-Sectional and Gray Matter Areas as Quantified With Radially Sampled Averaged Magnetization Inversion Recovery Acquisitions. Frontiers in Neurology, 12, 637198. https://doi.org/10.3389/fneur.2021.637198

Akinci D’Antonoli T, Santini F, Deligianni X, Garcia Alzamora M, Rutz E, Bieri O, Brunner R, & Weidensteiner C. (2021). Combination of Quantitative MRI Fat Fraction and Texture Analysis to Evaluate Spastic Muscles of Children With Cerebral Palsy. Frontiers in Neurology, 12, 633808. https://doi.org/10.3389/fneur.2021.633808

Santini F, Deligianni X, Paoletti M., Solazzo F, Weigel M, de Sousa P.L., Bieri O., Monforte M, Ricci E., Tasca G., Pichiecchio A., & Bergsland N. (2021). Fast Open-Source Toolkit for Water T2 Mapping in the Presence of Fat From Multi-Echo Spin-Echo Acquisitions for Muscle MRI. Frontiers in Neurology, 12. https://doi.org/10.3389/fneur.2021.630387

Krieger M., Giger A, Jud C, Duetschler A., Salomir R, Bieri O., Bauman G, Nguyen D, Cattin P.C., Weber D.C., Lomax A.J., & Zhang Y. (2021). Liver-ultrasound-guided lung tumour tracking for scanned proton therapy: a feasibility study. Physics in Medicine and Biology, 66(3). https://doi.org/10.1088/1361-6560/abcde6

Willers C, Bauman G, Andermatt S, Santini F, Sandkühler R, Ramsey KA, Cattin PC, Bieri O, Pusterla O, & Latzin P. (2021). The impact of segmentation on whole-lung functional MRI quantification: Repeatability and reproducibility from multiple human observers and an artificial neural network. Magnetic Resonance in Medicine, 85(2), 1079–1092. https://doi.org/10.1002/mrm.28476

Iyyakkunnel, Santhosh, Schäper, Jessica, & Bieri, Oliver. (2021). Configuration-based electrical properties tomography. Magnetic Resonance in Medicine, 85(4), 1855–1864. https://doi.org/10.1002/mrm.28542

Giger A, Krieger M, Jud C, Duetschler A, Salomir R, Bieri O, Bauman G, Nguyen D, Weber DC, Lomax AJ, Zhang Y, & Cattin PC. (2020). Liver-ultrasound based motion modelling to estimate 4D dose distributions for lung tumours in scanned proton therapy. Physics in Medicine and Biology, 65(23), 235050. https://doi.org/10.1088/1361-6560/abaa26

Deligianni X, Hirschmann A, Place N, Bieri O, & Santini F. (2020). Dynamic MRI of plantar flexion: A comprehensive repeatability study of electrical stimulation-gated muscle contraction standardized on evoked force. PLoS ONE, 15(11 November), e0241832. https://doi.org/10.1371/journal.pone.0241832

Santini F, Pansini M, Hrabak-Paar M, Yates D, Langenickel TH, Bremerich J, Bieri O, & Schubert T. (2020). On the optimal temporal resolution for phase contrast cardiovascular magnetic resonance imaging: Establishment of baseline values. Journal of Cardiovascular Magnetic Resonance, 22(1), 72. https://doi.org/10.1186/s12968-020-00669-1

Weigel M, Haas T, Wendebourg MJ, Schlaeger R, & Bieri O. (2020). Imaging of the thoracic spinal cord using radially sampled averaged magnetization inversion recovery acquisitions. Journal of Neuroscience Methods, 343, 108825. https://doi.org/10.1016/j.jneumeth.2020.108825

Bauman G, & Bieri O. (2020). Balanced steady-state free precession thoracic imaging with half-radial dual-echo readout on smoothly interleaved archimedean spirals. Magnetic Resonance in Medicine, 84(1), 237–246. https://doi.org/10.1002/mrm.28119

Zbýň, Štefan, Zbýň, Štefan, Zbýň, Štefan, Schreiner, Markus, Schreiner, Markus, Juras, Vladimir, Juras, Vladimir, Mlynarik, Vladimir, Mlynarik, Vladimir, Szomolanyi, Pavol, Szomolanyi, Pavol, Laurent, Didier, Scotti, Celeste, Haber, Harry, Deligianni, Xeni, Deligianni, Xeni, Bieri, Oliver, Bieri, Oliver, Nieminen, Miika T., et al. (2020). Assessment of Low-Grade Focal Cartilage Lesions in the Knee with Sodium MRI at 7 T: Reproducibility and Short-Term, 6-Month Follow-up Data. Investigative Radiology, 55(7), 430–437. https://doi.org/10.1097/RLI.0000000000000652

Deligianni, Xeni, Klenk, Christopher, Place, Nicolas, Garcia, Meritxell, Pansini, Michele, Hirschmann, Anna, Schmidt-Trucksäss, Arno, Bieri, Oliver, & Santini, Francesco. (2020). Dynamic MR imaging of the skeletal muscle in young and senior volunteers during synchronized minimal neuromuscular electrical stimulation. Magnetic Resonance Materials in Physics, Biology and Medicine, 33(3), 393–400. https://doi.org/10.1007/s10334-019-00787-7

Deligianni X, Klenk C, Place N, Garcia M, Pansini M, Hirschmann A, Schmidt-Trucksäss A, Bieri O, & Santini F. (2020). Dynamic MR imaging of the skeletal muscle in young and senior volunteers during synchronized minimal neuromuscular electrical stimulation. Magnetic Resonance Materials in Physics, Biology and Medicine, 33(3), 393–400. https://doi.org/10.1007/s10334-019-00787-7

Krieger M, Giger A, Salomir R, Bieri O, Celicanin Z, Cattin PC, Lomax AJ, Weber DC, & Zhang Y. (2020). Impact of internal target volume definition for pencil beam scanned proton treatment planning in the presence of respiratory motion variability for lung cancer: A proof of concept. Radiotherapy and Oncology, 145, 154–161. https://doi.org/10.1016/j.radonc.2019.12.001

Caviezel MP, Reichert CF, Sadeghi Bahmani D, Linnemann C, Liechti C, Bieri O, Borgwardt S, Leyhe T, & Melcher T. (2020). The Neural Mechanisms of Associative Memory Revisited: fMRI Evidence from Implicit Contingency Learning. Frontiers in Psychiatry, 10, 1002. https://doi.org/10.3389/fpsyt.2019.01002

Santini F, Gui L, Lorton O, Guillemin PC, Manasseh G, Roth M, Bieri O, Vallée JP, Salomir R, & Crowe LA. (2020). Ultrasound-driven cardiac MRI. Physica Medica, 70, 161–168. https://doi.org/10.1016/j.ejmp.2020.01.008

Afshari, Roya, Santini, Francesco, Heule, Rahel, Meyer, Craig H., Pfeuffer, Josef, & Bieri, Oliver. (2020). One-minute whole-brain magnetization transfer ratio imaging with intrinsic B1-correction. Magnetic Resonance in Medicine, 85(5), 2686–2695. https://doi.org/10.1002/mrm.28618

Fischer JGW, Maushart CI, Becker AS, Müller J, Madoerin P, Chirindel A, Wild D, Ter Voert EEGW, Bieri O, Burger I, & Betz MJ. (2020). Comparison of [18F]FDG PET/CT with magnetic resonance imaging for the assessment of human brown adipose tissue activity. EJNMMI Research, 10(1), 85. https://doi.org/10.1186/s13550-020-00665-7

Fischer, Jonas Gabriel William, Maushart, Claudia Irene, Becker, Anton S., Müller, Julian, Madoerin, Philipp, Chirindel, Alin, Wild, Damian, Ter Voert, Edwin E. G. W., Bieri, Oliver, Burger, Irene, & Betz, Matthias Johannes. (2020). Comparison of [; 18; F]FDG PET/CT with magnetic resonance imaging for the assessment of human brown adipose tissue activity. EJNMMI Research, 10(1), 85. https://doi.org/10.1186/s13550-020-00665-7

Nagy, Sara, Schädelin, Sabine, Hafner, Patricia, Bonati, Ulrike, Scherrer, Delia, Ebi, Selina, Schmidt, Simone, Orsini, Anna‐Lena, Bieri, Oliver, & Fischer, Dirk. (2020). Longitudinal reliability of outcome measures in patients with Duchenne muscular dystrophy [Journal-article]. Muscle & Nerve, 61(1), 63–68. https://doi.org/10.1002/mus.26690

Willers Christoph Corin, Pusterla Orso, Bauman Grzegorz, Andermatt Simon, Nyilas Sylvia, Santini Francesco, Pezold Simon, Sandkuehler Robin, Ramsey Kathryn, Cattin Philippe C., Bieri Oliver, & Latzin, Philipp. (2019). Inter-reader variation in lung segmentation of functional lung MRI quantification . European Respiratory Journal, Vol 54 Issue suppl 63, PA333. https://doi.org/10.1183/13993003.congress-2019.pa333

Nagy S, Hafner P, Schmidt S, Rubino-Nacht D, Schädelin S, Bieri O, & Fischer D. (2019). Tamoxifen in Duchenne muscular dystrophy (TAMDMD): Study protocol for a multicenter, randomized, placebo-controlled, double-blind phase 3 trial. Trials, 20(1), 637. https://doi.org/10.1186/s13063-019-3740-6

Hafner P, Bonati U, Klein A, Rubino D, Gocheva V, Schmidt S, Schroeder J, Bernert G, Laugel V, Steinlin M, Capone A, Gloor M, Bieri O, Hemkens LG, Speich B, Zumbrunn T, Gueven N, & Fischer D. (2019). Effect of combination l-citrulline and metformin treatment on motor function in patients with duchenne muscular dystrophy: A randomized clinical Trial. JAMA Network Open, 2(10), e1914171. https://doi.org/10.1001/jamanetworkopen.2019.14171

Meyer-Gerspach AC, Peterli R, Moor M, Madörin P, Schötzau A, Nabers D, Borgwardt S, Beglinger C, Bieri O, & Wölnerhanssen BK. (2019). Quantification of Liver, Subcutaneous, and Visceral Adipose Tissues by MRI Before and After Bariatric Surgery. Obesity Surgery, 29(9), 2795–2805. https://doi.org/10.1007/s11695-019-03897-2

Nyilas S, Bauman G, Pusterla O, Ramsey K, Singer F, Stranzinger E, Yammine S, Casaulta C, Bieri O, & Latzin P. (2019). Ventilation and perfusion assessed by functional MRI in children with CF: reproducibility in comparison to lung function. Journal of Cystic Fibrosis, 18(4), 543–550. https://doi.org/10.1016/j.jcf.2018.10.003

Latta, P., Juras, V., Kojan, M., Starcuk, Z., Deligianni, X., Bieri, O., Szomolanyi, P., Frollo, I., & Trattnig, S. (2019). The experimental setup for T2∗ mapping in achilles tendon and enthesis. 2019 Proceedings of the 12th International Conference on Measurement, MEASUREMENT 2019, 141–144. https://doi.org/10.23919/measurement47340.2019.8779934

L’Homel, B., Parent, L., Bieri, O., Celicanin, Z., Cattin, P., & Ken, S. (2019). EP-1944 Automated respiratory cycle binning for liver 4D-MR imaging [Journal-article]. Radiotherapy and Oncology, 133, S1059–S1060. https://doi.org/10.1016/s0167-8140(19)32364-3

Bauman G, Pusterla O, & Bieri O. (2019). Functional lung imaging with transient spoiled gradient echo. Magnetic Resonance in Medicine, 81(3), 1915–1923. https://doi.org/10.1002/mrm.27535

Heule R, Pfeuffer J, Meyer CH, & Bieri O. (2019). Simultaneous B1 and T1 mapping using spiral multislice variable flip angle acquisitions for whole-brain coverage in less than one minute. Magnetic Resonance in Medicine, 81(3), 1876–1889. https://doi.org/10.1002/mrm.27544

Hager B, Walzer SM, Deligianni X, Bieri O, Berg A, Schreiner MM, Zalaudek M, Windhager R, Trattnig S, & Juras V. (2019). Orientation dependence and decay characteristics of T2* relaxation in the human meniscus studied with 7 Tesla MR microscopy and compared to histology. Magnetic Resonance in Medicine, 81(2), 921–933. https://doi.org/10.1002/mrm.27443

Gashi, Gani, Madoerin, Philipp, Maushart, Claudia I., Michel, Regina, Senn, Jaël-Rut, Bieri, Oliver, & Betz, Matthias J. (2019). MRI characteristics of supraclavicular brown adipose tissue in relation to cold-induced thermogenesis in healthy human adults. Journal of Magnetic Resonance Imaging, 50(4), 1160–1168. https://doi.org/10.1002/jmri.26733

Giger, Alina, Jud, Christoph, Nguyen, Damien, Krieger, Miriam, Zhang, Ye, Lomax, Antony J., Bieri, Oliver, Salomir, Rares, & Cattin, Philippe C. (2019). Inter-fractional Respiratory Motion Modelling from Abdominal Ultrasound: A Feasibility Study. In Rekik, Islem; Adeli, Ehsan; Park, Sang Hyun (ed.), Lecture Notes in Computer Science (Vol. 11843). Springer. https://doi.org/10.1007/978-3-030-32281-6_2

Heule, Rahel, Pfeuffer, Josef, Meyer, Craig H., & Bieri, Oliver. (2019). Simultaneous B1 and T1 mapping using spiral multislice variable flip angle acquisitions for whole-brain coverage in less than one minute. Magnetic Resonance in Medicine, 81(3), 1876–1889. https://doi.org/10.1002/mrm.27544

Juras V, Schreiner M, Laurent D, Zbýň Š, Mlynarik V, Szomolanyi P, Hager B, Scotti C, Goldhahn J, Heule R, Bieri O, & Trattnig S. (2019). The comparison of the performance of 3 T and 7 T T2 mapping for untreated low-grade cartilage lesions. Magnetic Resonance Imaging, 55, 86–92. https://doi.org/10.1016/j.mri.2018.09.021

Mercado F., Mukaddam K., Filippi A., Bieri O.P., Lambrecht T.J., & Kuhl S. (2019). Fully digitally guided implant surgery based on magnetic resonance imaging. International Journal of Oral and Maxillofacial Implants, 34(2), 529–534. https://doi.org/10.11607/jomi.7076

Nagy S, Schmidt S, Hafner P, Klein A, Rubino-Nacht D, Gocheva V, Bieri O, Vuillerot C, Bonati U, & Fischer D. (2019). Measurements of motor function and other clinical outcome parameters in ambulant children with duchenne muscular dystrophy. Journal of Visualized Experiments, 2019(143). https://doi.org/10.3791/58784

Sandkuhler R., Bauman G., Nyilas S., Pusterla O., Willers C., Bieri O., Latzin P., Jud C., Jud C., & Cattin P.C. (2019). Gated Recurrent Neural Networks for Accelerated Ventilation MRI. Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 11861 LNCS, 549–556. https://doi.org/10.1007/978-3-030-32692-0_63

Sandkuhler R., Jud C., Bauman G., Willers C., Pusterla O., Nyilas S., Peters A., Ebner L., Stranziger E., Bieri O., Latzin P., & Cattin P.C. (2019). Weakly Supervised Learning Strategy for Lung Defect Segmentation. Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 11861 LNCS, 541–548. https://doi.org/10.1007/978-3-030-32692-0_62

Tsagkas, Charidimos, Magon, Stefano, Gaetano, Laura, Pezold, Simon, Naegelin, Yvonne, Amann, Michael, Stippich, Christoph, Cattin, Philippe, Wuerfel, Jens, Bieri, Oliver, Sprenger, Till, Kappos, Ludwig, & Parmar, Katrin. (2019). Preferential Spinal Cord Volume Loss in Primary Progressive Multiple Sclerosis. Multiple Sclerosis Journal, 25(7), 947–957. https://doi.org/10.1177/1352458518775006

Tsagkas, C., Horvath, A., Altermatt, A., Pezold, S., Weigel, M., Haas, T., Amann, M., Kappos, L., Sprenger, T., Bieri, O., Cattin, P., & Parmar, K. (2019). Automatic Spinal Cord Gray Matter Quantification: A Novel Approach. American Journal of Neuroradiology, 40(9), 1592–1600. https://doi.org/10.3174/ajnr.a6157

Nyilas S, Bauman G, Pusterla O, Sommer G, Singer F, Stranzinger E, Heyer C, Ramsey K, Schlegtendal A, Benzrath S, Casaulta C, Goutaki M, Kuehni CE, Bieri O, Koerner-Rettberg C, & Latzin P. (2018). Structural and functional lung impairment in primary ciliary dyskinesia :assessment with magnetic resonance imaging and multiple breath washout in comparison to spirometry. Annals of the American Thoracic Society, 15(12), 1434–1442. https://doi.org/10.1513/AnnalsATS.201712-967OC

Santini, Francesco, Bieri, Oliver, Bieri, Oliver, & Deligianni, Xeni. (2018). OpenForce MR: A low-cost open-source MR-compatible force sensor. Concepts in Magnetic Resonance Part B: Magnetic Resonance Engineering, 48B(4). https://doi.org/10.1002/cmr.b.21404

Nyilas, Sylvia, Bauman, Grzegorz, Pusterla, Orso, Stranzinger, Enno, Ramsey, Kathryn, Singer, Florian, Yammine, Sophie, Casaulta, Carmen, Bieri, Oliver, & Latzin, Philipp. (2018). Repeatability of ventilation and perfusion assessment by functional MRI in children with CF [EUROPEAN RESPIRATORY SOC JOURNALS LTD]. 52. https://doi.org/10.1183/13993003.congress-2018.oa4989

Giger A., Stadelmann M., Preiswerk F., Jud C., De Luca V., Celicanin Z., Bieri O., Bieri O., Salomir R., & Cattin P.C. (2018). Erratum: Ultrasound-driven 4D MRI (Physics in Medicine and Biology (2018) 63 (145015) DOI: 10.1088/1361-6560/aaca1d). Physics in Medicine and Biology, 63(17). https://doi.org/10.1088/1361-6560/aad482

Tsagkas C, Magon S, Gaetano L, Pezold S, Naegelin Y, Amann M, Stippich C, Cattin P, Wuerfel J, Bieri O, Sprenger T, Kappos L, & Parmar K. (2018). Spinal cord volume loss: A marker of disease progression in multiple sclerosis. Neurology, 91(4), e349–e358. https://doi.org/10.1212/WNL.0000000000005853

Giger A., Stadelmann M., Preiswerk F., Jud C., De Luca V., Celicanin Z., Bieri O., Bieri O., Salomir R., & Cattin P.C. (2018). Ultrasound-driven 4D MRI. Physics in Medicine and Biology, 63(14). https://doi.org/10.1088/1361-6560/aaca1d