Prof. Dr. Benjamin Engel

Wietrzynski, Wojciech, Lamm, Lorenz, Wood, William HJ, Loukeri, Matina-Jasemi, Malone, Lorna, Peng, Tingying, Johnson, Matthew P, & Engel, Benjamin D. (2025). Molecular architecture of thylakoid membranes within intact spinach chloroplasts. eLife, 14. https://doi.org/10.7554/elife.105496

Bertiaux, Eloïse, Louvel, Vincent, McCafferty, Caitlyn L., van den Hoek, Hugo, Batman, Umut, Mukherjee, Souradip, Bournonville, Lorène, Mercey, Olivier, Mean, Isabelle, Müller, Adrian, Van der Stappen, Philippe, Buss, Garrison, Daraspe, Jean, Genoud, Christel, Stearns, Tim, Engel, Benjamin D., Hamel, Virginie, & Guichard, Paul. (2025). The Luminal Ring Protein C2CD3 Acts as a Radial In-to-Out Organizer of the Distal Centriole and Appendages. In bioRxiv (Cold Spring Harbor Laboratory). Cold Spring Harbor Laboratory. https://doi.org/10.1101/2025.06.17.660204

Kishore, Vinith, Bebarnot, Valentin, Righetto, Ricardo D, Khorashadizadeh, AmirEhsan, Engel, Benjamin, & Dokmanić, Ivan. (2025). End-to-end localized deep learning for Cryo-ET. In arXiv (01.08.2025). Cornell University. https://doi.org/10.48550/arXiv.2501.15246

Waltz, Florent, Righetto, Ricardo D., Lamm, Lorenz, Salinas-Giegé, Thalia, Kelley, Ron, Zhang, Xianjun, Obr, Martin, Khavnekar, Sagar, Kotecha, Abhay, & Engel, Benjamin D. (2025). In-cell architecture of the mitochondrial respiratory chain [Journal-article]. Science, 387(6740), 1296–1301. https://doi.org/10.1126/science.ads8738

Kelley, Ron, Khavnekar, Sagar, Righetto, Ricardo D., Heebner, Jessica, Obr, Martin, Zhang, Xianjun, Chakraborty, Saikat, Tagiltsev, Grigory, Michael, Alicia K., van Dorst, Sofie, Waltz, Florent, McCafferty, Caitlyn L., Lamm, Lorenz, Zufferey, Simon, Van der Stappen, Philippe, van den Hoek, Hugo, Wietrzynski, Wojciech, Harar, Pavol, Wan, William, et al. (2024). Towards community-driven visual proteomics with large-scale cryo-electron tomography of Chlamydomonas reinhardtii [Posted-content]. In bioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2024.12.28.630444

Wietrzynski, Wojciech, Lamm, Lorenz, Wood, William H.J., Loukeri, Matina-Jasemi, Malone, Lorna, Peng, Tingying, Johnson, Matthew P., & Engel, Benjamin D. (2024). Molecular architecture of thylakoid membranes within intact spinach chloroplasts [Posted-content]. In bioRxiv (Cold Spring Harbor Laboratory). Cold Spring Harbor Laboratory. https://doi.org/10.1101/2024.11.24.625035

Nam, Onyou, Musiał, Sabina, Demulder, Manon, McKenzie, Caroline, Dowle, Adam, Dowson, Matthew, Barrett, James, Blaza, James N., Engel, Benjamin D., & Mackinder, Luke C.M. (2024). A protein blueprint of the diatom CO2-fixing organelle [Journal-article]. Cell, 187(21), 5935–5950. https://doi.org/10.1016/j.cell.2024.09.025

Shimakawa, Ginga, Demulder, Manon, Flori, Serena, Kawamoto, Akihiro, Tsuji, Yoshinori, Nawaly, Hermanus, Tanaka, Atsuko, Tohda, Rei, Ota, Tadayoshi, Matsui, Hiroaki, Morishima, Natsumi, Okubo, Ryosuke, Wietrzynski, Wojciech, Lamm, Lorenz, Righetto, Ricardo D., Uwizeye, Clarisse, Gallet, Benoit, Jouneau, Pierre-Henri, Gerle, Christoph, et al. (2024). Diatom pyrenoids are encased in a protein shell that enables efficient CO2 fixation [Journal-article]. Cell, 187(21), 5919–5934. https://doi.org/10.1016/j.cell.2024.09.013

Waltz, Florent, Righetto, Ricardo D., Kelley, Ron, Zhang, Xianjun, Obr, Martin, Khavnekar, Sagar, Kotecha, Abhay, & Engel, Benjamin D. (2024). In-cell architecture of the mitochondrial respiratory chain [Posted-content]. In bioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2024.09.03.610704

Pan, Sichen, Gries, Karin, Engel, Benjamin D., Schroda, Michael, Haselwandter, Christoph A., & Scheuring, Simon. (2024). The cyanobacterial protein VIPP1 forms ESCRT-III-like structures on lipid bilayers [Journal-article]. Nature Structural & Molecular Biology, 32(3), 543–554. https://doi.org/10.1038/s41594-024-01367-7

Eckardt, Nancy A, Allahverdiyeva, Yagut, Alvarez, Clarisa E, Büchel, Claudia, Burlacot, Adrien, Cardona, Tanai, Chaloner, Emma, Engel, Benjamin D, Grossman, Arthur R, Harris, Dvir, Herrmann, Nicolas, Hodges, Michael, Kern, Jan, Kim, Tom Dongmin, Maurino, Veronica G, Mullineaux, Conrad W, Mustila, Henna, Nikkanen, Lauri, Schlau-Cohen, Gabriela, et al. (2024). Lighting the way: Compelling open questions in photosynthesis research [Journal-article]. The Plant Cell, 36(10), 3914–3943. https://doi.org/10.1093/plcell/koae203

Perez-Boerema, Annemarie, Engel, Benjamin D., & Wietrzynski, Wojciech. (2024). Evolution of Thylakoid Structural Diversity [Journal-article]. Annual Review of Cell and Developmental Biology, 40(1), 169–193. https://doi.org/10.1146/annurev-cellbio-120823-022747

Chung, Kin Pan, Frieboese, Daniel, Waltz, Florent, Engel, Benjamin D., & Bock, Ralph. (2024). Identification and characterization of the COPII vesicle-forming GTPase Sar1 in Chlamydomonas. Plant Direct, 8(6). https://doi.org/10.1002/pld3.614

McCafferty, Caitlyn L., Klumpe, Sven, Amaro, Rommie E., Kukulski, Wanda, Collinson, Lucy, & Engel, Benjamin D. (2024). Integrating cellular electron microscopy with multimodal data to explore biology across space and time [Journal-article]. Cell, 187(3), 563–584. https://doi.org/10.1016/j.cell.2024.01.005

Lamm, Lorenz, Zufferey, Simon, Righetto, Ricardo D, Wietrzynski, Wojciech, Yamauchi, Kevin A, Burt, Alister, Liu, Ye, Zhang, Hanyi, Martinez-Sanchez, Antonio, Ziegler, Sebastian, Isensee, Fabian, Schnabel, Julia A, Engel, Benjamin D, & Peng, Tingying. (2024). MemBrain v2: an end-to-end tool for the analysis of membranes in cryo-electron tomography. In bioRxiv (05.01.2024). Cold Spring Harbor Laboratory. https://doi.org/10.1101/2024.01.05.574336

Yamauchi, Kevin A, Lamm, Lorenz, Gaifas, Lorenzo, Righetto, Ricardo D, Litvinov, Daniil, Engel, Benjamin D, & Harrington, Kyle. (2024). Surforama: interactive exploration of volumetric data by leveraging 3D surfaces. In bioRxiv (02.06.2024). https://doi.org/10.1101/2024.05.30.596601

Shimakawa, Ginga, Demulder, Manon, Flori, Serena, Kawamoto, Akihiro, Tsuji, Yoshinori, Nawaly, Hermanus, Tanaka, Atsuko, Tohda, Rei, Tadayoshi Ota, Matsui, Hiroaki, Morishima, Natsumi, Okubo, Ryosuke, Wojciech Wietrzynski, Wojciech, Lamm, Lorenz, Righetto, Ricardo D, Uwizeye, Clarisse, Gallet, Benoit, Jouneau, Pierre-Henri, Gerle, Christoph, et al. (2023). Diatom pyrenoids are encased in a protein shell that enables efficient CO2 fixation. In bioRxiv (26.10.2023). Cold Spring Harbor. https://doi.org/10.1101/2023.10.25.564039

Bregy, Irina, Radecke, Julika, Noga, Akira, van den Hoek, Hugo, Kern, Mara, Haenni, Beat, Engel, Benjamin D., Siebert, C. Alistair, Ishikawa, Takashi, Zuber, Benoît, & Ochsenreiter, Torsten. (2023). Cryo-electron tomography sheds light on the elastic nature 2 of the Trypanosoma brucei tripartite attachment complex. bioRxiv. https://doi.org/10.1101/2023.03.06.531305

Goodenough, Ursula, & Engel, Benjamin D. (2023). Cell Ultrastructure. In Goodenough, Ursula (Ed.), The Chlamydomonas Sourcebook: Vol. 1: Introduction to Chlamydomonas and Its Laboratory Use (3rd ed., pp. 17–40). Academic Press, Elsevier Inc. https://doi.org/10.1016/B978-0-12-822457-1.00015-7

Khavnekar, Sagar, Kelley, Ron, Waltz, Florent, Wietrzynski, Wojciech, Zhang, Xianjun, Obr, Martin, Tagiltsev, Grigory, Beck, Florian, Wan, William, Briggs, John, Engel, Ben, Plitzko, Juergen, & Kotecha, Abhay. (2023). Towards the Visual Proteomics of C. reinhardtii using High-throughput Collaborative in situ Cryo-ET. Microscopy and Microanalysis, 29(29 Suppl 1), 961–963. https://doi.org/10.1093/micmic/ozad067.480

Kulaj, Konxhe, Harger, Alexandra, Bauer, Michaela, Caliskan, Özüm S., Gupta, Tilak Kumar, Chiang, Dapi Menglin, Milbank, Edward, Reber, Josefine, Karlas, Angelos, Kotzbeck, Petra, Sailer, David N., Volta, Francesco, Lutter, Dominik, Prakash, Sneha, Merl-Pham, Juliane, Ntziachristos, Vasilis, Hauner, Hans, Pfaffl, Michael W., Tschöp, Matthias H., et al. (2023). Adipocyte-derived extracellular vesicles increase insulin secretion through transport of insulinotropic protein cargo. Nature Communications, 14(1), 709. https://doi.org/10.1038/s41467-023-36148-1

Righetto, Ricardo D., & Engel, Benjamin D. (2023). Visualizing a Carbon-Fixing Nanowire Inside Bacteria. Chimia, 77(5), 348. https://doi.org/10.2533/chimia.2023.348

Wietrzynski, Wojciech, & Engel, Benjamin D. (2023). Supramolecular Organization of Chloroplast Membranes. In Grossman, Arthur R.; Wollman, Francis-André (Ed.), The Chlamydomonas Sourcebook: Vol. 2: Organellar and Metabolic Processes (3rd ed., pp. 763–785). Academic Press, Elsevier Inc. https://doi.org/10.1016/B978-0-12-821430-5.00018-3

Dietrich, Helge M., Righetto, Ricardo D., Kumar, Anuj, Wietrzynski, Wojciech, Trischler, Raphael, Schuller, Sandra K., Wagner, Jonathan, Schwarz, Fabian M., Engel, Benjamin D., Müller, Volker, & Schuller, Jan M. (2022). Membrane-anchored HDCR nanowires drive hydrogen-powered CO2 fixation. Nature, 607(7920), 823–830. https://doi.org/10.1038/s41586-022-04971-z

Lamm, Lorenz, Righetto, Ricardo D., Wietrzynski, Wojciech, Pöge, Matthias, Martinez-Sanchez, Antonio, Peng, Tingying, & Engel, Benjamin D. (2022). MemBrain: a deep learning-aided pipeline for detection of membrane proteins in cryo-electron tomograms. Computer Methods and Programs in Biomedicine, 224, 106990. https://doi.org/10.1016/j.cmpb.2022.106990

Righetto, Ricardo D., & Engel, Benjamin D. (2022). Expanding the arsenal of bacterial spearguns. Nature Microbiology, 7(3), 363–364. https://doi.org/10.1038/s41564-022-01078-z

Righetto, Ricardo D, & Engel, Benjamin D. (2022). Publisher Correction: Expanding the arsenal of bacterial spearguns. Nature Microbiology, 7(March 2022), 1. https://doi.org/10.1038/s41564-022-01102-2

van den Hoek, Hugo, Klena, Nikolai, Jordan, Mareike A., Alvarez Viar, Gonzalo, Righetto, Ricardo D., Schaffer, Miroslava, Erdmann, Philipp S., Wan, William, Geimer, Stefan, Plitzko, Jürgen M., Baumeister, Wolfgang, Pigino, Gaia, Hamel, Virginie, Guichard, Paul, & Engel, Benjamin D. (2022). In situ architecture of the ciliary base reveals the stepwise assembly of intraflagellar transport trains. Science, 377(6605), 543–548. https://doi.org/10.1126/science.abm6704

Gupta, Tilak Kumar, Klumpe, Sven, Gries, Karin, Heinz, Steffen, Wietrzynski, Wojciech, Ohnishi, Norikazu, Niemeyer, Justus, Spaniol, Benjamin, Schaffer, Miroslava, Rast, Anna, Ostermeier, Matthias, Strauss, Mike, Plitzko, Jürgen M., Baumeister, Wolfgang, Rudack, Till, Sakamoto, Wataru, Nickelsen, Jörg, Schuller, Jan M., Schroda, Michael, & Engel, Benjamin D. (2021). Structural basis for VIPP1 oligomerization and maintenance of thylakoid membrane integrity. Cell, 184(14), 3643–3659. https://doi.org/10.1016/j.cell.2021.05.011

Moebel, Emmanuel, Martinez-Sanchez, Antonio, Lamm, Lorenz, Righetto, Ricardo D., Wietrzynski, Wojciech, Albert, Sahradha, Larivière, Damien, Fourmentin, Eric, Pfeffer, Stefan, Ortiz, Julio, Baumeister, Wolfgang, Peng, Tingying, Engel, Benjamin D., & Kervrann, Charles. (2021). Deep learning improves macromolecule identification in 3D cellular cryo-electron tomograms. Nature Methods, 18(11), 1386–1394. https://doi.org/10.1038/s41592-021-01275-4

Moebel, Emmanuel, Martinez-Sanchez, Antonio, Lamm, Lorenz, Righetto, Ricardo D, Wietrzynski, Wojciech, Albert, Sahradha, Larivière, Damien, Fourmentin, Eric, Pfeffer, Stefan, Ortiz, Julio, Baumeister, Wolfgang, Peng, Tingying, Engel, Benjamin D, & Kervrann, Charles. (2021). Author Correction: Deep learning improves macromolecule identification in 3D cellular cryo-electron tomograms. Nature Methods, 19 (129), 1178.

Waltz, Florent, Salinas-Giegé, Thalia, Englmeier, Robert, Meichel, Herrade, Soufari, Heddy, Kuhn, Lauriane, Pfeffer, Stefan, Förster, Friedrich, Engel, Benjamin D., Giegé, Philippe, Drouard, Laurence, & Hashem, Yaser. (2021). How to build a ribosome from RNA fragments in Chlamydomonas mitochondria. Nature Communications, 12(1), 7176. https://doi.org/10.1038/s41467-021-27200-z

Wietrzynski, Wojciech, & Engel, Benjamin D. (2021). Chlorophyll biogenesis sees the light. Nature Plants. Scientific Reports, 7(4), 380–381. https://doi.org/10.1038/s41477-021-00900-6

Zabret, Jure, Bohn, Stefan, Schuller, Sandra K., Arnolds, Oliver, Möller, Madeline, Meier-Credo, Jakob, Liauw, Pasqual, Chan, Aaron, Tajkhorshid, Emad, Langer, Julian D., Stoll, Raphael, Krieger-Liszkay, Anja, Engel, Benjamin D., Rudack, Till, Schuller, Jan M., & Nowaczyk, Marc M. (2021). Structural insights into photosystem II assembly. Nature Plants. Scientific Reports, 7(4), 524–538. https://doi.org/10.1038/s41477-021-00895-0

Albert, Sahradha, Wietrzynski, Wojciech, Lee, Chia-Wei, Schaffer, Miroslava, Beck, Florian, Schuller, Jan M., Salomé, Patrice A., Plitzko, Jürgen M., Baumeister, Wolfgang, & Engel, Benjamin D. (2020). Direct visualization of degradation microcompartments at the ER membrane. Proceedings of the National Academy of Sciences of the United States of America, 117(2), 1069–1080. https://doi.org/10.1073/pnas.1905641117

He, Shan, Chou, Hui-Ting, Matthies, Doreen, Wunder, Tobias, Meyer, Moritz T., Atkinson, Nicky, Martinez-Sanchez, Antonio, Jeffrey, Philip D., Port, Sarah A., Patena, Weronika, He, Guanhua, Chen, Vivian K., Hughson, Frederick M., McCormick, Alistair J., Müller-Cajar, Oliver, Engel, Benjamin D., Yu, Zhiheng, & Jonikas, Martin C. (2020). The structural basis of Rubisco phase separation in the pyrenoid. Nature Plants. Scientific Reports, 6(12), 1480–1490. https://doi.org/10.1038/s41477-020-00811-y

Klena, Nikolai, Le Guennec, Maeva, Tassin, Anne-Marie, van den Hoek, Hugo, Erdmann, Philipp S., Schaffer, Miroslava, Geimer, Stefan, Aeschlimann, Gabriel, Kovacik, Lubomir, Sadian, Yashar, Goldie, Kenneth N., Stahlberg, Henning, Engel, Benjamin D., Hamel, Virginie, & Guichard, Paul. (2020). Architecture of the centriole cartwheel-containing region revealed by cryo-electron tomography. The EMBO Journal, 39(22), e106246. https://doi.org/10.15252/embj.2020106246

Le Guennec, Maeva, Klena, Nikolai, Gambarotto, Davide, Laporte, Marine H., Tassin, Anne-Marie, van den Hoek, Hugo, Erdmann, Philipp S., Schaffer, Miroslava, Kovacik, Lubomir, Borgers, Susanne, Goldie, Kenneth N., Stahlberg, Henning, Bornens, Michel, Azimzadeh, Juliette, Engel, Benjamin D., Hamel, Virginie, & Guichard, Paul. (2020). A helical inner scaffold provides a structural basis for centriole cohesion. Science Advances, 6(7), eaaz4137. https://doi.org/10.1126/sciadv.aaz4137

Theis, Jasmine, Niemeyer, Justus, Schmollinger, Stefan, Ries, Fabian, Rütgers, Mark, Gupta, Tilak Kumar, Sommer, Frederik, Muranaka, Ligia Segatto, Venn, Benedikt, Schulz-Raffelt, Miriam, Willmund, Felix, Engel, Benjamin D., & Schroda, Michael. (2020). VIPP2 interacts with VIPP1 and HSP22E/F at chloroplast membranes and modulates a retrograde signal for HSP22E/F gene expression. Plant, Cell and Environment, 43(5), 1212–1229. https://doi.org/10.1111/pce.13732

Wietrzynski, Wojciech, Schaffer, Miroslava, Tegunov, Dimitry, Albert, Sahradha, Kanazawa, Atsuko, Plitzko, Jürgen M., Baumeister, Wolfgang, & Engel, Benjamin D. (2020). Charting the native architecture of Chlamydomonas thylakoid membranes with single-molecule precision. eLife, 9, e53740. https://doi.org/10.7554/elife.53740

Chicano, Andrea, Crosas, Eva, Otón, Joaquín, Melero, Roberto, Engel, Benjamin D., & Daban, Joan-Ramon. (2019). Frozen-hydrated chromatin from metaphase chromosomes has an interdigitated multilayer structure. The EMBO Journal, 38(7), e99769. https://doi.org/10.15252/embj.201899769

Craig, Evan W., Müller, David M., Bigge, Brae M., Schaffer, Miroslava, Engel, Benjamin D., & Avasthi, Prachee. (2019). The elusive actin cytoskeleton of a green alga expressing both conventional and divergent actins. Molecular Biology of the Cell, 30(22), 2827–2837. https://doi.org/10.1091/mbc.e19-03-0141

Rast, Anna, Schaffer, Miroslava, Albert, Sahradha, Wan, William, Pfeffer, Stefan, Beck, Florian, Plitzko, Jürgen M., Nickelsen, Jörg, & Engel, Benjamin D. (2019). Biogenic regions of cyanobacterial thylakoids form contact sites with the plasma membrane. Nature Plants. Scientific Reports, 5(4), 436–446. https://doi.org/10.1038/s41477-019-0399-7

Schaffer, Miroslava, Pfeffer, Stefan, Mahamid, Julia, Kleindiek, Stephan, Laugks, Tim, Albert, Sahradha, Engel, Benjamin D., Rummel, Andreas, Smith, Andrew J., Baumeister, Wolfgang, & Plitzko, Juergen M. (2019). A cryo-FIB lift-out technique enables molecular-resolution cryo-ET within native Caenorhabditis elegans tissue. Nature Methods, 16(8), 757–762. https://doi.org/10.1038/s41592-019-0497-5

Schuller, Jan M., Birrell, James A., Tanaka, Hideaki, Konuma, Tsuyoshi, Wulfhorst, Hannes, Cox, Nicholas, Schuller, Sandra K., Thiemann, Jacqueline, Lubitz, Wolfgang, Sétif, Pierre, Ikegami, Takahisa, Engel, Benjamin D., Kurisu, Genji, & Nowaczyk, Marc M. (2019). Structural adaptations of photosynthetic complex I enable ferredoxin-dependent electron transfer. Science, 363(6424), 257–260. https://doi.org/10.1126/science.aau3613

Theis, Jasmine, Gupta, Tilak Kumar, Klingler, Johannes, Wan, William, Albert, Sahradha, Keller, Sandro, Engel, Benjamin D., & Schroda, Michael. (2019). VIPP1 rods engulf membranes containing phosphatidylinositol phosphates. Scientific Reports, 9(1), 8725. https://doi.org/10.1038/s41598-019-44259-3

Delarue, M., Brittingham, G. P., Pfeffer, S., Surovtsev, I. V., Pinglay, S., Kennedy, K. J., Schaffer, M., Gutierrez, J. I., Sang, D., Poterewicz, G., Chung, J. K., Plitzko, J. M., Groves, J. T., Jacobs-Wagner, C., Engel, B. D., & Holt, L. J. (2018). mTORC1 controls phase separation and the biophysical properties of the cytoplasm by tuning crowding. Cell, 174(2), 338–349. https://doi.org/10.1016/j.cell.2018.05.042

Kovtun, Oleksiy, Leneva, Natalya, Bykov, Yury S., Ariotti, Nicholas, Teasdale, Rohan D., Schaffer, Miroslava, Engel, Benjamin D., Owen, David J., Briggs, John A. G., & Collins, Brett M. (2018). Structure of the membrane-assembled retromer coat determined by cryo-electron tomography. Nature, 561(7724), 561–564. https://doi.org/10.1038/s41586-018-0526-z

Mosalaganti, Shyamal, Kosinski, Jan, Albert, Sahradha, Schaffer, Miroslava, Strenkert, Daniela, Salomé, Patrice A., Merchant, Sabeeha S., Plitzko, Jürgen M., Baumeister, Wolfgang, Engel, Benjamin D., & Beck, Martin. (2018). In situ architecture of the algal nuclear pore complex. Nature Communications, 9(1), 2361. https://doi.org/10.1038/s41467-018-04739-y

Albanese, Pascal, Melero, Roberto, Engel, Benjamin D., Grinzato, Alessandro, Berto, Paola, Manfredi, Marcello, Chiodoni, Angelica, Vargas, Javier, Sorzano, Carlos Óscar Sánchez, Marengo, Emilio, Saracco, Guido, Zanotti, Giuseppe, Carazo, Jose-Maria, & Pagliano, Cristina. (2017). Pea PSII-LHCII supercomplexes form pairs by making connections across the stromal gap. Scientific Reports, 7(1), 10067. https://doi.org/10.1038/s41598-017-10700-8

Albert, Sahradha, Schaffer, Miroslava, Beck, Florian, Mosalaganti, Shyamal, Asano, Shoh, Thomas, Henry F., Plitzko, Jürgen M., Beck, Martin, Baumeister, Wolfgang, & Engel, Benjamin D. (2017). Proteasomes tether to two distinct sites at the nuclear pore complex. Proceedings of the National Academy of Sciences of the United States of America, 114(52), 13726–13731. https://doi.org/10.1073/pnas.1716305114

Bykov, Yury S., Schaffer, Miroslava, Dodonova, Svetlana O., Albert, Sahradha, Plitzko, Jürgen M., Baumeister, Wolfgang, Engel, Benjamin D., & Briggs, John Ag. (2017). The structure of the COPI coat determined within the cell. eLife, 6, e32493. https://doi.org/10.7554/elife.32493

Freeman Rosenzweig, Elizabeth S., Xu, Bin, Kuhn Cuellar, Luis, Martinez-Sanchez, Antonio, Schaffer, Miroslava, Strauss, Mike, Cartwright, Heather N., Ronceray, Pierre, Plitzko, Jürgen M., Förster, Friedrich, Wingreen, Ned S., Engel, Benjamin D., Mackinder, Luke C. M., & Jonikas, Martin C. (2017). The eukaryotic CO2-concentrating organelle is liquid-like and exhibits dynamic reorganization. Cell, 171(1), 148–162. https://doi.org/10.1016/j.cell.2017.08.008

Pfeffer, Stefan, Dudek, Johanna, Schaffer, Miroslava, Ng, Bobby G., Albert, Sahradha, Plitzko, Jürgen M., Baumeister, Wolfgang, Zimmermann, Richard, Freeze, Hudson H., Engel, Benjamin D., & Förster, Friedrich. (2017). Dissecting the molecular organization of the translocon-associated protein complex. Nature Communications, 8, 14516. https://doi.org/10.1038/ncomms14516

Schaffer, Miroslava, Mahamid, Julia, Engel, Benjamin D., Laugks, Tim, Baumeister, Wolfgang, & Plitzko, Jürgen M. (2017). Optimized cryo-focused ion beam sample preparation aimed at in situ structural studies of membrane proteins. Journal of Structural Biology, 197(2), 73–82. https://doi.org/10.1016/j.jsb.2016.07.010

Asano, Shoh, Engel, Benjamin D., & Baumeister, Wolfgang. (2016). In situ cryo-electron tomography: a post-reductionist approach to structural biology. Journal of Molecular Biology, 428(2 Pt A), 332–343. https://doi.org/10.1016/j.jmb.2015.09.030

Engel, Benjamin D., Schaffer, Miroslava, Albert, Sahradha, Asano, Shoh, Plitzko, Jürgen M., & Baumeister, Wolfgang. (2015). In situ structural analysis of Golgi intracisternal protein arrays. Proceedings of the National Academy of Sciences of the United States of America, 112(36), 9–11264. https://doi.org/10.1073/pnas.1515337112

Engel, Benjamin D, Schaffer, Miroslava, Cueller Kuhn, Luis, Villa, Elizabeth, Plitzko, Jürgen M, & Baumeister, Wolfgang. (2015). Correction: Native architecture of the Chlamydomonas chloroplast revealed by in situ cryo-electron tomography. eLife, September, 1. https://doi.org/10.7554/elife.11383

Engel, Benjamin D., Schaffer, Miroslava, Kuhn Cuellar, Luis, Villa, Elizabeth, Plitzko, Jürgen M., & Baumeister, Wolfgang. (2015). Native architecture of the Chlamydomonas chloroplast revealed by in situ cryo-electron tomography. eLife, 4, e04889. https://doi.org/10.7554/elife.04889

Schaffer, Miroslava, Engel, Benjamin D., Laugks, Tim, Mahamid, Julia, Plitzko, Jürgen M., & Baumeister, Wolfgang. (2015). Cryo-focused ion beam sample preparation for imaging vitreous cells by cryo-electron tomography. Bio-protocol, 5(17), e1575. https://doi.org/10.21769/bioprotoc.1575

Bhogaraju, Sagar, Weber, Kristina, Engel, Benjamin D., Lechtreck, Karl-Ferdinand, & Lorentzen, Esben. (2014). Getting tubulin to the tip of the cilium: one IFT train, many different tubulin cargo-binding sites? BioEssays : News and Reviews in Molecular, Cellular and Developmental Biology, 36(5), 7–463. https://doi.org/10.1002/bies.201400007

Bhogaraju, Sagar, Engel, Benjamin D., & Lorentzen, Esben. (2013). Intraflagellar transport complex structure and cargo interactions. Cilia, 2(1), 10. https://doi.org/10.1186/2046-2530-2-10

Shih, Sheng Min, Engel, Benjamin D., Kocabas, Fatih, Bilyard, Thomas, Gennerich, Arne, Marshall, Wallace F., & Yildiz, Ahmet. (2013). Intraflagellar transport drives flagellar surface motility. eLife, 2, e00744. https://doi.org/10.7554/elife.00744

Engel, Benjamin D., Ishikawa, Hiroaki, Wemmer, Kimberly A., Geimer, Stefan, Wakabayashi, Ken-ichi, Hirono, Masafumi, Craige, Branch, Pazour, Gregory J., Witman, George B., Kamiya, Ritsu, & Marshall, Wallace F. (2012). The role of retrograde intraflagellar transport in flagellar assembly, maintenance, and function. Journal of Cell Biology, 199(1), 67–151. https://doi.org/10.1083/jcb.201206068

Mizuno, Naoko, Taschner, Michael, Engel, Benjamin D., & Lorentzen, Esben. (2012). Structural studies of ciliary components. Journal of Molecular Biology, 422(2), 80–163. https://doi.org/10.1016/j.jmb.2012.05.040

Rigort, Alexander, Villa, Elizabeth, Bäuerlein, Felix J. B., Engel, Benjamin D., & Plitzko, Jürgen M. (2012). Integrative approaches for cellular cryo-electron tomography: correlative imaging and focused ion beam micromachining. Methods in Cell Biology, 111, 81–259. https://doi.org/10.1016/b978-0-12-416026-2.00014-5

Engel, Benjamin D., Ishikawa, Hiroaki, Feldman, Jessica L., Wilson, Christopher W., Chuang, Pao-Tien, Snedecor, June, Williams, Janice, Sun, Zhaoxia, & Marshall, Wallace F. (2011). A cell-based screen for inhibitors of flagella-driven motility in Chlamydomonas reveals a novel modulator of ciliary length and retrograde actin flow. Cell Motility and the Cytoskeleton, 68(3), 188–203. https://doi.org/10.1002/cm.20504

Engel, Benjamin D., Lechtreck, Karl-Ferdinand, Sakai, Tsuyoshi, Ikebe, Mitsuo, Witman, George B., & Marshall, Wallace F. (2009). Total internal reflection fluorescence (TIRF) microscopy of Chlamydomonas flagella. Methods in cell biology, 93, 77–157. https://doi.org/10.1016/s0091-679x(08)93009-0

Engel, Benjamin D., Ludington, William B., & Marshall, Wallace F. (2009). Intraflagellar transport particle size scales inversely with flagellar length: revisiting the balance-point length control model. Journal of Cell Biology, 187(1), 9–81. https://doi.org/10.1083/jcb.200812084