Prof. Dr. Attila Becskei

Rahaman, Sayanur, Faravelli, Simone, Voegeli, Sylvia, & Becskei, Attila. (2023). Polysome propensity and tunable thresholds in coding sequence length enable differential mRNA stability. Science Advances, 9(39), eadh9545. https://doi.org/10.1126/sciadv.adh9545

Becskei, Attila, & Rahaman, Sayanur. (2022). The life and death of RNA across temperatures. Computational and structural biotechnology journal, 20, 4325–4336. https://doi.org/10.1016/j.csbj.2022.08.008

Jaquet, Vincent, Wallerich, Sandrine, Voegeli, Sylvia, Túrós, Demeter, Viloria, Eduardo C., & Becskei, Attila. (2022). Determinants of the temperature adaptation of mRNA degradation. Nucleic Acids Research, 50(2), 1092–1110. https://doi.org/10.1093/nar/gkab1261

Iakovlev, Mikhail, Faravelli, Simone, & Becskei, Attila. (2021). Gene Families With Stochastic Exclusive Gene Choice Underlie Cell Adhesion in Mammalian Cells. Frontiers in Cell and Developmental Biology, 9, 642212. https://doi.org/10.3389/fcell.2021.642212

Becskei, Attila. (2020). Tuning up Transcription Factors for Therapy. Molecules, 25(8), 1902. https://doi.org/10.3390/molecules25081902

Baudrimont, Antoine, Jaquet, Vincent, Wallerich, Sandrine, Voegeli, Sylvia, & Becskei, Attila. (2019). Contribution of RNA Degradation to Intrinsic and Extrinsic Noise in Gene Expression. Cell Reports, 26(13), 3752–3761. https://doi.org/10.1016/j.celrep.2019.03.001

Wada, Takeo, Wallerich, Sandrine, & Becskei, Attila. (2019). Synthetic transcription factors switch from local to long-range control during cell differentiation. ACS Synthetic Biology, 8(2), 223–231. https://doi.org/10.1021/acssynbio.8b00369

Wada, Takeo, Wallerich, Sandrine, & Becskei, Attila. (2018). Stochastic Gene Choice during Cellular Differentiation. Cell Reports, 24(13), 3503–3512. https://doi.org/10.1016/j.celrep.2018.08.074

Baudrimont, Antoine, Voegeli, Sylvia, Viloria, Eduardo Calero, Stritt, Fabian, Lenon, Marine, Wada, Takeo, Jaquet, Vincent, & Becskei, Attila. (2017). Multiplexed gene control reveals rapid mRNA turnover. Science Advances, 3(7), e1700006. https://doi.org/10.1126/sciadv.1700006

Gencoglu, Mumun, Schmidt, Alexander, & Becskei, Attila. (2017). Measurement of in vivo protein binding affinities in a signaling network with mass spectrometry. ACS Synthetic Biology, 6(7), 1305–1314. https://doi.org/10.1021/acssynbio.6b00282

Jaquet, Vincent, Hsu, Chieh, & Becskei, Attila. (2017). Measurement of bistability in a multidimensional parameter space. Integrative Biology, 9(2), 167–177. https://doi.org/10.1039/c6ib00242k

Maleki, Farzaneh, & Becskei, Attila. (2017). An open-loop approach to calculate noise-induced transitions. Journal of Theoretical Biology, 415, 145–157. https://doi.org/10.1016/j.jtbi.2016.12.012

Wada, Takeo, & Becskei, Attila. (2017). Impact of Methods on the Measurement of mRNA Turnover. International Journal of Molecular Sciences, 18(12), 12. https://doi.org/10.3390/ijms18122723

Hsu, Chieh, Jaquet, Vincent, Gencoglu, Mumun, & Becskei, Attila. (2016). Protein Dimerization Generates Bistability in Positive Feedback Loops. Cell Reports, 16(5), 1204–1210. https://doi.org/10.1016/j.celrep.2016.06.072

Hsu, Chieh, Jaquet, Vincent, Maleki, Farzaneh, & Becskei, Attila. (2016). Contribution of bistability and noise to cell fate transitions determined by feedback opening. Journal of Molecular Biology, 428(20), 4115–4128. https://doi.org/10.1016/j.jmb.2016.07.024

Baudrimont, Antoine, & Becskei, Attila. (2015). Gene regulation: Expression feels two pulses [Review of Gene regulation: Expression feels two pulses]. Nature, 527, Article 7576. https://doi.org/10.1038/nature15634

Májer, Imre, Hajihosseini, Amirhossein, & Becskei, Attila. (2015). Identification of optimal parameter combinations for the emergence of bistability. Physical biology, 12(6), 66011. https://doi.org/10.1088/1478-3975/12/6/066011

Bonde, Marie Mi, Voegeli, Sylvia, Baudrimont, Antoine, Séraphin, Bertrand, & Becskei, Attila. (2014). Quantification of pre-mRNA escape rate and synergy in splicing. Nucleic acids research, 42(20), 12847–12860. https://doi.org/10.1093/nar/gku1014

Stölting, Meline Nogueira Lucena, Ferrari, Stefano, Handschin, Christoph, Becskei, Attila, Provenzano, Maurizio, Sulser, Tullio, & Eberli, Daniel. (2013). Myoblasts inhibit prostate cancer growth by paracrine secretion of tumor necrosis factor-α. Journal of Urology, 189(5), 1952–1959. https://doi.org/10.1016/j.juro.2012.10.071

Hsu, Chieh, Scherrer, Simone, Buetti-Dinh, Antoine, Ratna, Prasuna, Pizzolato, Julia, Jaquet, Vincent, & Becskei, Attila. (2012). Stochastic signalling rewires the interaction map of a multiple feedback network during yeast evolution. Nature Communications, 3, 682. https://doi.org/10.1038/ncomms1687

Becskei, Attila, Scherrer, Simone, Kelemen, Janos Z., & Murray, Ann Ehrenhofer. (2011). Modeling of chromosomal epigenetic silencing processes. Transcription, 2(4), 173–178. https://doi.org/10.4161/trns.2.4.16344

Ratna, Prasuna, & Becskei, Attila. (2011). Construction of cis-regulatory input functions of yeast promoters. In Becskei, Attila (Ed.), Yeast Genetic Networks (pp. 45–61). Springer Nature. https://doi.org/10.1007/978-1-61779-086-7_3

Kelemen, János Z., Ratna, Prasuna, Scherrer, Simone, & Becskei, Attila. (2010). Spatial epigenetic control of mono- and bistable gene expression. PLoS Biology, 8(3), e1000332. https://doi.org/10.1371/journal.pbio.1000332

Sun, Li, & Becskei, Attila. (2010). Systems biology: The cost of feedback control [Review of Systems biology: The cost of feedback control]. Nature, 467, Article 7312. https://doi.org/10.1038/467163a

Becskei, Attila. (2009). Linearization through distortion: a new facet of negative feedback in signalling. Molecular Systems Biology, 5, 255. https://doi.org/10.1038/msb.2009.14

Buetti-Dinh, Antoine, Ungricht, Rosemarie, Kelemen, János Z., Shetty, Chetak, Ratna, Prasuna, & Becskei, Attila. (2009). Control and signal processing by transcriptional interference. Molecular Systems Biology, 5, 300. https://doi.org/10.1038/msb.2009.61

Byun, Reine, & Becskei, Attila. (2009). Biology inspires engineering [Review of Biology inspires engineering]. Genome Biology, 10, Article 11. https://doi.org/10.1186/gb-2009-10-11-317

Ratna, Prasuna, Scherrer, Simone, Fleischli, Christoph, & Becskei, Attila. (2009). Synergy of repression and silencing gradients along the chromosome. Journal of Molecular Biology, 387(4), 826–839. https://doi.org/10.1016/j.jmb.2009.02.025

Becskei, Attila, & Grusby, Michael J. (2007). Contribution of IL-12R mediated feedback loop to Th1 cell differentiation. FEBS Letters, 581(27), 5199–5206. https://doi.org/10.1016/j.febslet.2007.10.007

Acar, Murat, Becskei, Attila, & van Oudenaarden, Alexander. (2005). Enhancement of cellular memory by reducing stochastic transitions. Nature, 435(7039), 228–232. https://doi.org/10.1038/nature03524

Becskei, Attila, Kaufmann, Benjamin B., & van Oudenaarden, Alexander. (2005). Contributions of low molecule number and chromosomal positioning to stochastic gene expression. Nature Genetics, 37(9), 937–944. https://doi.org/10.1038/ng1616

Becskei, Attila, & Mattaj, Iain W. (2005). Quantitative models of nuclear transport. Current Opinion in Cell Biology, 17(1), 27–34. https://doi.org/10.1016/j.ceb.2004.12.010

Ozbudak, Ertugrul M., Becskei, Attila, & van Oudenaarden, Alexander. (2005). A system of counteracting feedback loops regulates Cdc42p activity during spontaneous cell polarization. Developmental Cell, 9(4), 565–571. https://doi.org/10.1016/j.devcel.2005.08.014

Becskei, Attila, Boselli, Monica G., & van Oudenaarden, Alexander. (2004). Amplitude control of cell-cycle waves by nuclear import. Nature Cell Biology, 6(5), 451–457. https://doi.org/10.1038/ncb1124

Becskei, Attila, & Mattaj, Iain W. (2003). The strategy for coupling the RanGTP gradient to nuclear protein export. Proceedings of the National Academy of Sciences of the United States of America, 100(4), 1717–1722. https://doi.org/10.1073/pnas.252766999

Louis, Matthieu, & Becskei, Attila. (2002). Binary and graded responses in gene networks. Science Signaling, 2002(143), pe33. https://doi.org/10.1126/stke.2002.143.pe33

Becskei, A., Séraphin, B., & Serrano, L. (2001). Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion. The EMBO Journal, 20(10), 2528–2535. https://doi.org/10.1093/emboj/20.10.2528

Becskei, A., & Serrano, L. (2000). Engineering stability in gene networks by autoregulation. Nature, 405(6786), 590–593. https://doi.org/10.1038/35014651

Jancsó, G., Domoki, F., Sántha, P., Varga, J., Fischer, J., Orosz, K., Penke, B., Becskei, Attila, Dux, M., & Tóth, L. (1998). Beta-amyloid (1-42) peptide impairs blood-brain barrier function after intracarotid infusion in rats. Neuroscience Letters, 253(2), 139–141. https://doi.org/10.1016/s0304-3940(98)00622-3