Publications by Type
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Baan, Jochem, Holloway‐Phillips, Meisha, Nelson, Daniel B., New Phytologist. https://doi.org/10.1111/nph.20430
, & Kahmen, Ansgar. (2025). Phylogenetic and biochemical drivers of plant species variation in organic compound hydrogen stable isotopes: novel mechanistic constraints [Journal-article]. Carruthers, Tom, Moerland, Michelangelo S., Ebersbach, Jana, Favre, Adrien, Folk, Ryan A., Hawkins, Julie A., Muellner-Riehl, Alexandra N., Röser, Martin, Soltis, Douglas E., Tkach, Natalia, Baker, William J., Nature Communications, 15(1). https://doi.org/10.1038/s41467-024-45289-w
, & Eiserhardt, Wolf L. (2024). Repeated upslope biome shifts in Saxifraga during late-Cenozoic climate cooling. Bätscher, L., & de Vos, J. M. (2024). Avoiding impacts of phylogenetic tip-state-errors on dispersal and extirpation rates in alpine plant biogeography. Journal of Biogeography, 51(6), 1104–1116. https://doi.org/10.1111/jbi.14811
Zuntini, A. R., Carruthers, T., Maurin, O., Bailey, P. C., Leempoel, K., Brewer, G. E., Epitawalage, N., Françoso, E., Gallego-Paramo, B., McGinnie, C., Negrão, R., Roy, S. R., Simpson, L., Toledo Romero, E., Barber, V. M. A., Botigué, L., Clarkson, J. J., Cowan, R. S., Dodsworth, S., et al. (2024). Phylogenomics and the rise of the angiosperms. Nature, 629(8013), 843–850. https://doi.org/10.1038/s41586-024-07324-0
Mora-Carrera, E., Stubbs, R.L., Potente, G., Yousefi, N., Keller, B., Ecology and Evolution, 14(3). https://doi.org/10.1002/ece3.10940
, Szövényi, P., & Conti, E. (2024). Genomic analyses elucidate S-locus evolution in response to intra-specific losses of distyly in Primula vulgaris. Augustijnen, Hannah, Bätscher, Livio, Cesanek, Martin, Chkhartishvili, Tinatin, Dincă, Vlad, Iankoshvili, Giorgi, Ogawa, Kota, Vila, Roger, Klopfstein, Seraina, Science Advances, 10. https://doi.org/10.1126/sciadv.adl0989
, & Lucek, Kay. (2024). A macroevolutionary role for chromosomal fusion and fission in Erebia butterflies. Dos Santos,Patrícia, Oliveira, M. Alexandra, Karger,Dirk N, Lucek,Kay, Branquinho,Cristina, & Evolutionary Journal of the Linnean Society, 3(1). https://doi.org/10.1093/evolinnean/kzae012
. (2024). Niche evolution during allopatric and sympatric diversification of Aeonium (Crassulaceae) on the Canary Islands [Journal-article]. Pillon,Yohan, Crayn,D., Streiff, Serafin J.R., & Swainsona, 38, 8. https://know.ourplants.org/wp-content/uploads/2024/09/JABG38P153_Pillon.pdf
(2024). A suprageneric classification of Oxalidales. Liu, Jin-Mei, Alpine Botany, 133(2), 69–84. https://doi.org/10.1007/s00035-023-00294-5
, Körner, Christian, & Yang, Yang. (2023). Phylogeny and phenotypic adjustments drive functional traits in Rhododendron across elevations in its diversity hot-spot in W-China [Journal-article]. Messerschmid, T. F. E., Abrahamczyk, S., Bañares-Baudet, Á., Brilhante, M. A., Eggli, U., Hühn, P., Kadereit, J. W., dos Santos, P., de Vos, J. M., & Kadereit, G. (2023). Inter- and intra-island speciation and their morphological and ecological correlates in Aeonium (Crassulaceae), a species-rich Macaronesian radiation. Annals of Botany, 131(4), 697–721. https://doi.org/10.1093/aob/mcad033
Joyce, E. M., Appelhans, M. S., Buerki, S., Cheek, M., de Vos, J. M., Pirani, J. R., Zuntini, A. R., Bachelier, J. B., Bayly, M. J., Callmander, M. W., Devecchi, M. F., Pell, S. K., Groppo, M., Lowry, P. P., Mitchell, J., Siniscalchi, C. M., Munzinger, J., Orel, H. K., Pannell, C. M., et al. (2023). Phylogenomic analyses of Sapindales support new family relationships, rapid Mid-Cretaceous Hothouse diversification, and heterogeneous histories of gene duplication. Frontiers in Plant Science, 14. https://doi.org/10.3389/fpls.2023.1063174
Carruthers, Tom, Sun, Miao, Baker, William J., Smith, Stephen A., Systematic Biology, 71(5), 1124–1146. https://doi.org/10.1093/sysbio/syac012
, & Eiserhardt, Wolf L. (2022). The Implications of Incongruence between Gene Tree and Species Tree Topologies for Divergence Time Estimation. dos Santos, Patricia, Brilhante, Miguel Angelo, Messerschmid, Thibaud F. E., Serrano, Helena Cristina, Kadereit, Gudrun, Branquinho, Cristina, & Frontiers in Plant Science, 13, 1023595. https://doi.org/10.3389/fpls.2022.1023595
(2022). Plant growth forms dictate adaptations to the local climate. Stöcklin, Jürg, & Bauhinia, 28, 87–102. https://botges.ch/file/con/113/87_102_BAUHINIA_28_2022_WEB_stoecklin_de_vos.pdf
(2022). Carl Friedrich Hagenbach (1771-1849) und seine “Basler Flora” im historischen Kontext. Lucek, Kay, Bouaouina, Selim, Jospin, Amanda, Grill, Andrea, & BMC ecology and evolution, 21(1), 95. https://doi.org/10.1186/s12862-021-01822-9
(2021). Prevalence and relationship of endosymbiotic Wolbachia in the butterfly genus Erebia. Messerschmid, Thibaud F. E., Wehling, Judith, Bobon, Nadine, Kahmen, Ansgar, Klak, Cornelia, Los, Jessica A., Nelson, Daniel B., dos Santos, Patricia, Perspectives in Plant Ecology Evolution and Systematics, 51, ARTN 125619. https://doi.org/10.1016/j.ppees.2021.125619
, & Kadereit, Gudrun. (2021). Carbon isotope composition of plant photosynthetic tissues reflects a Crassulacean Acid Metabolism (CAM) continuum in the majority of CAM lineages. Mora-Carrera, Emiliano, Stubbs, Rebecca L., Keller, Barbara, Léveillé-Bourret, Étienne, Molecular Ecology, 27. https://doi.org/10.1111/mec.16270
, Szövényi, Peter, & Conti, Elena. (2021). Different molecular changes underlie the same phenotypic transition: Origins and consequences of independent shifts to homostyly within species. Pitman, Nigel C. A., Suwa, Tomomi, Ulloa Ulloa, Carmen, Miller, James, Solomon, James, Philipp, Juliana, Vriesendorp, Corine F., Derby Lewis, Abigail, Perk, Sinem, Bonnet, Pierre, Joly, Alexis, Tobler, Mathias W., Best, Jason H., Janovec, John P., Nixon, Kevin C., Thiers, Barbara M., Tulig, Melissa, Gilbert, Edward E., Campostrini Forzza, Rafaela, et al. (2021). Identifying gaps in the photographic record of the vascular plant flora of the Americas. Nature Plants, 7(8), 1010–1014. https://doi.org/10.1038/s41477-021-00974-2
Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 375(1806), 20190539. https://doi.org/10.1098/rstb.2019.0539
, Augustijnen, Hannah, Baetscher, Livio, & Lucek, Kay. (2020). Speciation through chromosomal fusion and fission in Lepidoptera. Pegoraro, Luca, Botanical Journal of the Linnean Society, 191(2), 274–284. https://doi.org/10.1093/botlinnean/boz043
, Cozzolino, Salvatore, & Scopece, Giovanni. (2019). Shift in flowering time allows diploid and autotetraploid Anacamptis pyramidalis (Orchidaceae) to coexist by reducing competition for pollinators. de Vos, J. M., Keller, B., Zhang, L.-R., Nowak, M. D., & Conti, E. (2018). Mixed mating in homostylous species: Genetic and experimental evidence from an alpine plant with variable herkogamy, primula halleri. International Journal of Plant Sciences, 179(2), 87–99. https://doi.org/10.1086/695527
Goolsby, Eric W., Moore, Abigail J., Hancock, Lillian P., American Journal of Botany, 105(3), 602–613. https://doi.org/10.1002/ajb2.1051
, & Edwards, Erika J. (2018). Molecular evolution of key metabolic genes during transitions to C-4 and CAM photosynthesis. Hancock, Lillian P., Obbens, Frank, Moore, Abigail J., Thiele, Kevin, American Journal of Botany, 105(6), 1021–1034. https://doi.org/10.1002/ajb2.1110
, West, Judy, Holtum, Joseph A. M., & Edwards, Erika J. (2018). Phylogeny, evolution, and biogeographic history of Calandrinia (Montiaceae). Moore, Abigail J., Systematic Biology, 67(3), 367–383. https://doi.org/10.1093/sysbio/syx078
, Hancock, Lillian P., Goolsby, Eric, & Edwards, Erika J. (2018). Targeted Enrichment of Large Gene Families for Phylogenetic Inference: Phylogeny and Molecular Evolution of Photosynthesis Genes in the Portullugo Clade (Caryophyllales). Thomson, Scott A., Pyle, Richard L., Ahyong, Shane T., Alonso-Zarazaga, Miguel, Ammirati, Joe, Araya, Juan Francisco, Ascher, John S., Audisio, Tracy Lynn, Azevedo-Santos, Valter M., Bailly, Nicolas, Baker, William J., Balke, Michael, Barclay, Maxwell V. L., Barrett, Russell L., Benine, Ricardo C., Bickerstaff, James R. M., Bouchard, Patrice, Bour, Roger, Bourgoin, Thierry, et al. (2018). Taxonomy based on science is necessary for global conservation. Plos Biology, 16(3), e2005075. https://doi.org/10.1371/journal.pbio.2005075
Pérez-Escobar, O. A., Chomicki, G., Condamine, F. L., De Vos, J. M., Martins, A. C., Smidt, E. C., Klitgård, B., Gerlach, G., & Heinrichs, J. (2017). Multiple Geographical Origins of Environmental Sex Determination enhanced the diversification of Darwin’s Favourite Orchids. Scientific Reports, 7(1). https://doi.org/10.1038/s41598-017-12300-y
Keller, B., de Vos, J. M., Schmidt-Lebuhn, A. N., Thomson, J. D., & Conti, E. (2016). Both morph- and species-dependent asymmetries affect reproductive barriers between heterostylous species. Ecology and Evolution, 6(17), 6223–6244. https://doi.org/10.1002/ece3.2293
Edwards, E. J., De Vos, J. M., & Donoghue, M. J. (2015). Doubtful pathways to cold tolerance in plants. Nature, 521(7552), E5–E6. https://doi.org/10.1038/nature14393
De Vos, J. M., Joppa, L. N., Gittleman, J. L., Stephens, P. R., & Pimm, S. L. (2015). Estimating the normal background rate of species extinction. Conservation Biology, 29(2), 452–462. https://doi.org/10.1111/cobi.12380
Haller, B. C., De Vos, J. M., Keller, B., Hendry, A. P., & Conti, E. (2014). A tale of two morphs: Modeling pollen transfer, magic traits, and reproductive isolation in parapatry. PLoS ONE, 9(9). https://doi.org/10.1371/journal.pone.0106512
de Vos, J. M., Hughes, C. E., Schneeweiss, G. M., Moore, B. R., & Conti, E. (2014). Heterostyly accelerates diversification via reduced extinction in primroses. Proceedings of the Royal Society B: Biological Sciences, 281(1784). https://doi.org/10.1098/rspb.2014.0075
Abrahamczyk, S., de Vos, J. M., Sedivy, C., Gottleuber, P., & Kessler, M. (2014). A humped latitudinal phylogenetic diversity pattern of orchid bees (Hymenoptera: Apidae: Euglossini) in western Amazonia: Assessing the influence of climate and geologic history. Ecography, 37(5), 500–508. https://doi.org/10.1111/j.1600-0587.2013.00417.x
de Vos, J. M., Wüest, R. O., & Conti, E. (2014). Small and ugly? Phylogenetic analyses of the “selfing syndrome” reveal complex evolutionary fates of monomorphic primrose flowers. Evolution, 68(4), 1042–1057. https://doi.org/10.1111/evo.12331
Koenen, E.J.M., South African Journal of Botany, 89, 19–30. https://doi.org/10.1016/j.sajb.2013.07.005
, Atchison, G.W., Simon, M.F., Schrire, B.D., de Souza, E.R., de Queiroz, L.P., & Hughes, C.E. (2013). Exploring the tempo of species diversification in legumes. Schirrmeister, B. E., De Vos, J. M., Antonelli, A., & Bagheri, H. C. (2013). Evolution of multicellularity coincided with increased diversification of cyanobacteria and the Great Oxidation Event. Proceedings of the National Academy of Sciences of the United States of America, 110(5), 1791–1796. https://doi.org/10.1073/pnas.1209927110
Keller, B., De Vos, J. M., & Conti, E. (2012). Decrease of sexual organ reciprocity between heterostylous primrose species, with possible functional and evolutionary implications. Annals of Botany, 110(6), 1233–1244. https://doi.org/10.1093/aob/mcs199
Schmidt-Lebuhn, A. N., de Vos, J. M., Keller, B., & Conti, E. (2012). Phylogenetic analysis of Primula section Primula reveals rampant non-monophyly among morphologically distinct species. Molecular Phylogenetics and Evolution, 65(1), 23–34. https://doi.org/10.1016/j.ympev.2012.05.015
de Vos, J. M., Keller, B., Isham, S. T., Kelso, S., & Conti, E. (2012). Reproductive implications of herkogamy in homostylous primroses: Variation during anthesis and reproductive assurance in alpine environments. Functional Ecology, 26(4), 854–865. https://doi.org/10.1111/j.1365-2435.2012.02016.x
Edinburgh Journal of Botany, 66(1), 27–49. https://doi.org/10.1017/S0960428609005174
, & Breteler, F.J. (2009). A revision of the african genera paropsiopsis and smeathmannia (passifloraceae paropsieae), including a new species of paropsiopsis from cameroon. Other Publications
De Vos, J., Woudstra, Y., Leitch, I., & Hidalgo, O. (2024). Assessing male reproductive investment in Papaveraceae using flow cytometry reveals lineage-specific trajectories to pollen-to-ovule ratio reduction [Posted-content]. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2024.08.23.609364
de Vos, J. M., Streiff, S. J. R., Bachelier, J. B., Epitawalage, N., Maurin, O., Forest, F., & Baker, W. J. (2024). Phylogenomics of the pantropical Connaraceae: revised infrafamilial classification and the evolution of heterostyly [Journal-article]. Plant Systematics and Evolution, 310(4). https://doi.org/10.1007/s00606-024-01909-y
BAUHINIA – Zeitschrift Der Basler Botanischen Gesellschaft, 29, 3–6. https://doi.org/10.12685/bauhinia.1345
, & Stöcklin, Jürg. (2023). A second Renaissance of herbarium-based research, almost five centuries after their invention [Journal-article]. Grall, Aurélie, Guggisberg, Alessia, Nyffeler, Reto, & BAUHINIA – Zeitschrift Der Basler Botanischen Gesellschaft, 29. https://doi.org/10.12685/bauhinia.1363
(2023). Towards digitizing the botanical legacy of Fritz and Paul Sarasin in Basel and Zurich [Journal-article]. Kahmen, Ansgar, Nelson, Daniel B., BAUHINIA – Zeitschrift Der Basler Botanischen Gesellschaft, 29, 121–122. https://doi.org/10.12685/bauhinia.1364
, & Basler, David. (2023). Stable isotopes from herbarium specimens reveal physiological responses of plants to global change [Journal-article]. Stöcklin, Jürg, & BAUHINIA – Zeitschrift Der Basler Botanischen Gesellschaft, 29, 7–16. https://doi.org/10.12685/bauhinia.1346
(2023). Caspar Bauhin’s life (1560–1624) – Academic career, achievements as a botanist and his herbarium [Journal-article]. Augustijnen, Hannah, Bätscher, Livio, Cesanek, Martin, Chkhartishvili, Tinatin, Dincă, Vlad, Iankoshvili, Giorgi, Ogawa, Kota, Vila, Roger, Klopfstein, Seraina, A macroevolutionary role for chromosomal fusion and fission in Erebia butterflies [Posted-content]. https://doi.org/10.1101/2023.01.16.524200
, & Lucek, Kay. (2023). Moore, A. J., de Vos, J. M., Hancock, L. P., Goolsby, E., & Edwards, E. J. (2017). Targeted Enrichment of Large Gene Families for Phylogenetic Inference: Phylogeny and Molecular Evolution of Photosynthesis Genes in the Portullugo (Caryophyllales) [Posted-content]. Cold Spring Harbor Laboratory. https://doi.org/10.1101/145995