Prof. Dr. Jan Pieter Abrahams

Mohammed, Inayathulla, Schmitz, Kai A., Schenck, Niko, Balasopoulos, Dimitrios, Topitsch, Annika, Maier, Timm, & Abrahams, Jan Pieter. (2022). Catalytic cycling of human mitochondrial Lon protease. Structure, 30(9), 1254–1268. https://doi.org/10.1016/j.str.2022.06.006

Blum, Thorsten B., Housset, Dominique, Clabbers, Max T. B., van Genderen, Eric, Bacia-Verloop, Maria, Zander, Ulrich, McCarthy, Andrew A., Schoehn, Guy, Ling, Wai Li, & Abrahams, Jan Pieter. (2021). Statistically correcting dynamical electron scattering improves the refinement of protein nanocrystals, including charge refinement of coordinated metals. Acta Crystallographica Section D: Structural Biology, 77(Pt 1), 75–85. https://doi.org/10.1107/s2059798320014540

Blum, Thorsten B., Housset, Dominique, Clabbers, Max T. B., van Genderen, Eric, Bacia-Verloop, Maria, Zander, Ulrich, McCarthy, Andrew A., Schoehn, Guy, Li Ling, Wai, & Abrahams, Jan Pieter. (2020). Statistically correcting dynamical electron scattering improves refinement of protein nanocrystals, including charge refinement of coordinated metals. bioRxiv. https://doi.org/10.1101/2020.07.08.191049

Matz, Joachim M., Drepper, Benjamin, Blum, Thorsten B., van Genderen, Eric, Burrell, Alana, Martin, Peer, Stach, Thomas, Collinson, Lucy, Abrahams, Jan Pieter, Matuschewski, Kai, & Blackman, Michael J. (2020). A lipocalin mediates unidirectional haem biomineralization in malaria parasites. In bioRxiv. bioRxiv. https://doi.org/10.1101/2020.02.18.954289

Matz, Joachim M., Drepper, Benjamin, Blum, Thorsten B., van Genderen, Eric, Burrell, Alana, Martin, Peer, Stach, Thomas, Collinson, Lucy M., Abrahams, Jan Pieter, Matuschewski, Kai, & Blackman, Michael J. (2020). A lipocalin mediates unidirectional heme biomineralization in malaria parasites. Proceedings of the National Academy of Sciences of the United States of America, 117(28), 16546–16556. https://doi.org/10.1073/pnas.2001153117

Merg, Andrea D., Touponse, Gavin, van Genderen, Eric, Blum, Thorsten B., Zuo, Xiaobing, Bazrafshan, Alisina, Siaw, Hew Ming Helen, McCanna, Arthur, Dyer, R. Brian, Salaita, Khalid, Abrahams, Jan Pieter, & Conticello, Vincent P. (2020). Shape-Shifting Peptide Nanomaterials: Surface Asymmetry Enables pH-Dependent Formation and Interconversion of Collagen Tubes and Sheets. Journal of the American Chemical Society, 142(47), 19956–19968. https://doi.org/10.1021/jacs.0c08174

Thakkar, Pooja, Guzenko, Vitaliy A., Lu, Peng-Han, Dunin-Borkowski, Rafal E., Abrahams, Jan Pieter, & Tsujino, Soichiro. (2020). Fabrication of low aspect ratio three-element Boersch phase shifters for voltage-controlled three electron beam interference. Journal of Applied Physics, 128(13), 134502. https://doi.org/10.1063/5.0020383

van Schayck, J. Paul, van Genderen, Eric, Maddox, Erik, Roussel, Lucas, Boulanger, Hugo, Fröjdh, Erik, Abrahams, Jan-Pieter, Peters, Peter J., & Ravelli, Raimond B. G. (2020). Sub-pixel electron detection using a convolutional neural network. Ultramicroscopy, 218, 113091. https://doi.org/10.1016/j.ultramic.2020.113091

Xiao, Xiansha, Elsayed, Somayah S., Wu, Changsheng, van der Heul, Helga U., Metsä-Ketelä, Mikko, Du, Chao, Prota, Andrea E., Chen, Chun-Chi, Liu, Weidong, Guo, Rey-Ting, Abrahams, Jan Pieter, & van Wezel, Gilles P. (2020). Functional and Structural Insights into a Novel Promiscuous Ketoreductase of the Lugdunomycin Biosynthetic Pathway. ACS Chemical Biology, 15(9), 2529–2538. https://doi.org/10.1021/acschembio.0c00564

Zhang, Zhenzhen, Wen, Kai, Zhang, Chao, Laroche, Fabrice, Wang, Zhenglong, Zhou, Qiang, Liu, Zunfeng, Abrahams, Jan Pieter, & Zhou, Xiang. (2020). Extracellular Nanovesicle Enhanced Gene Transfection Using Polyethyleneimine in HEK293T Cells and Zebrafish Embryos. Frontiers in Bioengineering and Biotechnology, 8, 448. https://doi.org/10.3389/fbioe.2020.00448

Blum, T. B., & Abrahams, J. P. (2019). 6T17: Cryo-EM structure of the wild-type flagellar filament of the Firmicute Kurthia. Worldwide Protein Data Bank, 6T17. https://doi.org/10.2210/pdb6t17/pdb

Blum, Thorsten B., Filippidou, Sevasti, Fatton, Mathilda, Junier, Pilar, & Abrahams, Jan Pieter. (2019). The wild-type flagellar filament of the Firmicute Kurthia at 2.8 Å resolution in vivo. Scientific Reports, 9(1), 14948. https://doi.org/10.1038/s41598-019-51440-1

Clabbers, Max T. B., Gruene, Tim, van Genderen, Eric, & Abrahams, Jan Pieter. (2019). Reducing dynamical electron scattering reveals hydrogen atoms. Acta Crystallographica. Section A, Foundations and Advances, 75(Pt 1), 82–93. https://doi.org/10.1107/s2053273318013918

Gemmi, Mauro, Mugnaioli, Enrico, Gorelik, Tatiana E., Kolb, Ute, Palatinus, Lukas, Boullay, Philippe, Hovmöller, Sven, & Abrahams, Jan Pieter. (2019). 3D Electron Diffraction: The Nanocrystallography Revolution. ACS Central Science, 5(8), 1315–1329. https://doi.org/10.1021/acscentsci.9b00394

Latychevskaia, Tatiana, & Abrahams, Jan Pieter. (2019). Inelastic scattering and solvent scattering reduce dynamical diffraction in biological crystals. Acta Crystallographica Section B-Structural Science Crystal Engineering and Materials, 75, 523–531. https://doi.org/10.1107/s2052520619009661

Merg, Andrea D., Touponse, Gavin, van Genderen, Eric, Zuo, Xiaobing, Bazrafshan, Alisina, Blum, Thorsten, Hughes, Spencer, Salaita, Khalid, Abrahams, Jan Pieter, & Conticello, Vincent P. (2019). 2D Crystal Engineering of Nanosheets Assembled from Helical Peptide Building Blocks. Angewandte Chemie (International Ed. In English), 58(38), 13507–13512. https://doi.org/10.1002/anie.201906214

Merg, Andrea D., van Genderen, Eric, Bazrafshan, Alisina, Su, Hanquan, Zuo, Xiaobing, Touponse, Gavin, Blum, Thorsten B., Salaita, Khalid, Abrahams, Jan Pieter, & Conticello, Vincent P. (2019). Seeded Heteroepitaxial Growth of Crystallizable Collagen Triple Helices: Engineering Multifunctional Two-Dimensional Core-Shell Nanostructures. Journal of the American Chemical Society, 141(51), 20107–20117. https://doi.org/10.1021/jacs.9b09335

Moradi, Mina, Opara, Nadia L., Tulli, Ludovico G., Wäckerlin, Christian, Dalgarno, Scott J., Teat, Simon J., Baljozovic, Milos, Popova, Olha, van Genderen, Eric, Kleibert, Armin, Stahlberg, Henning, Abrahams, Jan Pieter, Padeste, Celestino, Corvini, Philippe F.-X., Jung, Thomas A., & Shahgaldian, Patrick. (2019). Supramolecular architectures of molecularly thin yet robust free-standing layers. Science Advances, 5(2), eaav4489. https://doi.org/10.1126/sciadv.aav4489

Wallin, Cecilia, Hiruma, Yoshitaka, Warmlander, Sebastian, Huvent, Isabelle, Jarvet, Juri, Abrahams, Jan Pieter, Graslund, Astrid, Lippens, Guy, & Luo, Jinghui. (2019). The Neuronal Tau Protein Blocks In Vitro Fibrillation of the Amyloid-beta (A beta) Peptide (Patent No. 3, Supplement 1). Biophysical Journal, 116(3, Supplement 1), Article 3, Supplement 1. https://doi.org/10.1016/j.bpj.2018.11.1657

Abrahams, Jan Pieter, Clabbers, Max, van Genderen, Eric, & Blum, Thorsten. (2018). Electron tomography of radiation sensitive 3D nano-crystals in imaging and diffraction mode [International Union of Crystallography]. Acta Crystallographica A-Foundation and Advances, 74, E83. https://doi.org/10.1107/s205327331809397x

Clabbers, Max, Gruene, Tim, van Genderen, Eric, & Abrahams, Jan Pieter. (2018). Experimental and computational reduction of dynamical electron scattering allows visualizing individual hydrogen atoms [International Union of Crystallography]. Acta Crystallographica A-Foundation and Advances, 74, E426. https://doi.org/10.1107/s2053273318088770

Clabbers, Max T. B., & Abrahams, Jan Pieter. (2018). Electron diffraction and three-dimensional crystallography for structural biology. Crystallography Reviews, 24(3), 176–204. https://doi.org/10.1080/0889311x.2018.1446427

Clabbers, Max T. B., Gruene, Tim, Parkhurst, James M., Abrahams, Jan Pieter, & Waterman, David G. (2018). Electron diffraction data processing with DIALS. Acta Crystallographica. Section D, Structural Biology, 74(Pt 6), 506–518. https://doi.org/10.1107/s2059798318007726

Thomas, Brijith, Dubey, Rajeev K., Clabbers, Max T. B., Gupta, Karthick Babu Sai Sankar, van Genderen, Eric, Jager, Wolter F., Abrahams, Jan Pieter, Sudholter, Ernst J. R., & de Groot, Huub J. M. (2018). A Molecular Level Approach To Elucidate the Supramolecular Packing of Light-Harvesting Antenna Systems. Chemistry (Weinheim an Der Bergstrasse, Germany), 24(56), 14989–14993. https://doi.org/10.1002/chem.201802288

Tinti, Gemma, Fröjdh, Erik, van Genderen, Eric, Gruene, Tim, Schmitt, Bernd, de Winter, D. A. Matthijs, Weckhuysen, Bert M., & Abrahams, Jan Pieter. (2018). Electron crystallography with the EIGER detector. IUCrJ, 5(Pt 2), 190–199. https://doi.org/10.1107/s2052252518000945

Tinti, G., Frojdh, E., Van Genderen, E., Gruene, T., Schmitt, B., De Winter, D. A. M., Weckhuysen, B. M., & Abrahams, J. P. (2018). CCDC 1817054: Experimental Crystal Structure Determination. Cambridge Structural Database, 1817054. https://doi.org/10.5517/ccdc.csd.cc1yzsnc

Wallin, Cecilia, Hiruma, Yoshitaka, Wärmländer, Sebastian K. T. S., Huvent, Isabelle, Jarvet, Jüri, Abrahams, Jan Pieter, Gräslund, Astrid, Lippens, Guy, & Luo, Jinghui. (2018). The Neuronal Tau Protein Blocks in Vitro Fibrillation of the Amyloid-β (Aβ) Peptide at the Oligomeric Stage. Journal of the American Chemical Society, 8138–8146. https://doi.org/10.1021/jacs.7b13623

Clabbers, Max T. B., van Genderen, Eric, Wan, Wei, Wiegers, Emiel L., Gruene, Tim, & Abrahams, Jan Pieter. (2017). Protein structure determination by electron diffraction using a single three-dimensional nanocrystal. Acta Crystallographica. Section D, Structural Biology, 73(Pt 9), 738–748. https://doi.org/10.1107/s2059798317010348

Matheson, John, Moldovan, G., Kirkland, Angus, Allinson, Nigel, & Abrahams, Jan Pieter. (2017). Testing and Comparison of Imaging Detectors for Electrons in the Energy Range 10-20 keV. Journal of Instrumentation, 12(11), C11016. https://doi.org/10.1088/1748-0221/12/11/c11016

Nederlof, Igor, van Genderen, Eric, Clabbers, Maddox E., & Abrahams, Jan Pieter. (2017). Electron Crystallography of Protein Nano-Crystals. Acta Crystallographica Section A: Foundations and Advances, A73, a297–a298. https://doi.org/10.1107/s0108767317097082

Nikolopoulos, Stavros, Galanis, Athanasios S., Vallcorba, Oriol, Eggeman, Alex, Das, Partha Pratim, Abrahams, Jan Pieter, Rauch, Edgar, Midgley, Paul, & Gemmi, Mauro. (2017). Random electron diffraction tomography for structure analysis of pharmaceuticals. Acta Crystallographica A-Foundation and Advances, 73, C980–C980. https://doi.org/10.1107/s2053273317085941

Su, Jian, Wang, Hongyan, Wu, Kunkun, Liu, Zhongsheng, Yin, Qu, Wang, Run, Lv, Wei, Yin, Shougen, Liu, Zunfeng, & Abrahams, Jan Pieter. (2017). Neutravidin-Mediated Extraction of Isolated Small Diameter Single Walled Carbon Nanotubes for Bio-Recognition. Journal of Nanoscience and Nanotechnology, 17(5), 3588–3596. https://doi.org/10.1166/jnn.2017.12860

Wang, Run, Boleij, Marissa, Yin, Qu, Galjart, Niels, Lin, Bencai, Yuan, Ningyi, Zhou, Xiang, Tan, Ming, Ding, Jianning, Liu, Zunfeng, & Abrahams, Jan Pieter. (2017). Purification of Biotinylated Proteins Using Single Walled Carbon Nanotube-Streptavidin Complexes. Journal of Nanoscience and Nanotechnology, 17(2), 926–931. https://doi.org/10.1166/jnn.2017.12716

Yin, Qu, Liu, Zunfeng, Laroche, Fabrice, Zhou, Xiang, Shao, Ningning, Lin, Bencai, Wang, Run, Yuan, Ningyi, Ding, Jianning, & Abrahams, Jan Pieter. (2017). A Novel Capturing Method for Quantification of Extra-Cellular Nanovesicles. Journal of Nanoscience and Nanotechnology, 17(2), 908–913. https://doi.org/10.1166/jnn.2017.12631

Abrahams, Jan Pieter. (2016). Electron nanodiffraction for structural biology. Acta Crystallographica A-Foundation and Advances, 72(a1), S6–S6. https://doi.org/10.1107/s2053273316099903

Luo, Jinghui, Wärmländer, Sebastian K. T. S., Gräslund, Astrid, & Abrahams, Jan Pieter. (2016). Reciprocal Molecular Interactions between the Aβ Peptide Linked to Alzheimer’s Disease and Insulin Linked to Diabetes Mellitus Type II. ACS Chemical Neuroscience, 7(3), 269–274. https://doi.org/10.1021/acschemneuro.5b00325

Luo, Jinghui, Wärmländer, Sebastian K. T. S., Gräslund, Astrid, & Abrahams, Jan Pieter. (2016). Cross-interactions between the Alzheimer Disease Amyloid-β Peptide and Other Amyloid Proteins: A Further Aspect of the Amyloid Cascade Hypothesis. Journal of Biological Chemistry, 292(5), 2046. https://doi.org/10.1074/jbc.r116.714576

Tiiman, Ann, Luo, Jinghui, Wallin, Cecilia, Olsson, Lisa, Lindgren, Joel, Jarvet, Jϋri, Per, Roos, Sholts, Sabrina B., Rahimipour, Shai, Abrahams, Jan Pieter, Karlström, Amelie Eriksson, Gräslund, Astrid, & Wärmländer, Sebastian K. T. S. (2016). Specific Binding of Cu(II) Ions to Amyloid-Beta Peptides Bound to Aggregation-Inhibiting Molecules or SDS Micelles Creates Complexes that Generate Radical Oxygen Species. Journal of Alzheimer’s Disease, 54(3), 971–982. https://doi.org/10.3233/jad-160427

van Genderen, E., Clabbers, M. T. B., Das, P. P., Stewart, A., Nederlof, I., Barentsen, K. C., Portillo, Q., Pannu, N. S., Nicolopoulos, S., Gruene, T., & Abrahams, J. P. (2016). Ab initio structure determination of nanocrystals of organic pharmaceutical compounds by electron diffraction at room temperature using a Timepix quantum area direct electron detector. Acta Crystallographica Section A : Foundations and Advances, 72(Pt 2), 236–242. https://doi.org/10.1107/s2053273315022500

Wallin, Cecilia, Kulkarni, Yashraj S., Abelein, Axel, Jarvet, Jüri, Liao, Qinghua, Strodel, Birgit, Olsson, Lisa, Luo, Jinghui, Abrahams, Jan Pieter, Sholts, Sabrina B., Roos, Per M., Kamerlin, Shina C. L., Gräslund, Astrid, & Wärmländer, Sebastian K. T. S. (2016). Characterization of Mn(II) ion binding to the amyloid-β peptide in Alzheimer’s disease. Journal of Trace Elements in Medicine and Biology, 38, 183–193. https://doi.org/10.1016/j.jtemb.2016.03.009

Abrahams, Jan Pieter, van Genderent, Eric, Nederlof, Igor, Clabbers, Max, & Li, Yaowang. (2015). Electron diffraction and imaging of 3D nanocrystals of pharmaceuticals, peptides and proteins [International Union of Crystallography]. Acta Crystallographica A-Foundation and Advances, 71, S103. https://doi.org/10.1107/s2053273315098496

Afanasyev, Pavel, Ravelli, Raimond B. G., Matadeen, Rishi, De Carlo, Sacha, van Duinen, Gijs, Alewijnse, Bart, Peters, Peter J., Abrahams, Jan-Pieter, Portugal, Rodrigo V., Schatz, Michael, & van Heel, Marin. (2015). A posteriori correction of camera characteristics from large image data sets. Scientific Reports, 5, 10317. https://doi.org/10.1038/srep10317

Clabbers, Max T. B., van Genderen, Eric, Nederlof, Igor, Li, Yao-Wang, & Abrahams, Jan Pieter. (2015). Electron crystallography of 3D nano-crystals [International Union of Crystallography]. Acta Crystallographica A-Foundation and Advances, 71, S405. https://doi.org/10.1107/s2053273315093985

Abelein, Axel, Abrahams, Jan Pieter, Danielsson, Jens, Graslund, Astrid, Jarvet, Juri, Luo, Jinghui, Tiiman, Ann, & Warmlander, Sebastian K. T. S. (2014). The hairpin conformation of the amyloid beta peptide is an important structural motif along the aggregation pathway. Journal of Biological Inorganic Chemistry, 19(4-5), 623–634. https://doi.org/10.1007/s00775-014-1131-8

Luo, Jinghui, & Abrahams, Jan Pieter. (2014). Cyclic Peptides as Inhibitors of Amyloid Fibrillation. Chemistry - A European Journal, 20(9), 2410–2419. https://doi.org/10.1002/chem.201304253

Luo, Jinghui, Mohammed, Inayathulla, Warmlander, Sebastian K. T. S., Hiruma, Yoshitaka, Graslund, Astrid, & Abrahams, Jan Pieter. (2014). Endogenous Polyamines Reduce the Toxicity of Soluble A beta Peptide Aggregates Associated with Alzheimer’s Disease. Biomacromolecules, 15(6), 1985–1991. https://doi.org/10.1021/bm401874j

Luo, Jinghui, Wärmländer, Sebastian K. T. S., Chien-Hung, Yu, Muhammad, Kamran, Gräslund, Astrid, & Abrahams, Jan Pieter. (2014). The Aβ peptide forms non-amyloid fibrils in the presence of carbon nanotubes. Nanoscale, 6(12), 6720–6726. https://doi.org/10.1039/c4nr00291a

Luo, Jinghui, Wärmländer, Sebastian K. T. S., Gräslund, Astrid, & Abrahams, Jan Pieter. (2014). Alzheimer Peptides Aggregate into Transient Nanoglobules That Nucleate Fibrils. Biochemistry, 53(40), 6302–6308. https://doi.org/10.1021/bi5003579

Luo, Jinghui, Wärmländer, Sebastian K. T. S., Gräslund, Astrid, & Abrahams, Jan Pieter. (2014). Non-chaperone Proteins Can Inhibit Aggregation and Cytotoxicity of Alzheimer Amyloid beta Peptide. Journal of Biological Chemistry, 289(40), 27766–27775. https://doi.org/10.1074/jbc.m114.574947

Liu, Zunfeng, Voskamp, Patrick, Zhang, Yue, Chu, Fuqiang, & Abrahams, Jan Pieter. (2013). Capture of unstable protein complex on the streptavidin-coated single-walled carbon nanotubes. Journal of Nanoparticle Research, 15(4), A 1582. https://doi.org/10.1007/s11051-013-1582-9

Luo, Jinghui, Otero, Jose M., Yu, Chien-Hung, Wärmländer, Sebastian K. T. S., Gräslund, Astrid, Overhand, Mark, & Abrahams, Jan Pieter. (2013). Inhibiting and Reversing Amyloid‐β Peptide (1-40) Fibril Formation with Gramicidin S and Engineered Analogues. Chemistry - A European Journal, 19(51), 17338–17348. https://doi.org/10.1002/chem.201301535

Luo, Jinghui, Wärmländer, Sebastian K. T. S., Gräslund, Astrid, & Abrahams, Jan Pieter. (2013). Human lysozyme inhibits the in vitro aggregation of Aβ peptides, which in vivo are associated with Alzheimer’s disease. Chemical Communications, 49(58), 6507–6509. https://doi.org/10.1039/c3cc42325e

Luo, Jinghui, Yu, Chien-Hung, Yu, Huixin, Borstnar, Rok, Kamerlin, Shina C. L., Gräslund, Astrid, Abrahams, Jan Pieter, & Wärmländer, Sebastian K. T. S. (2013). Cellular Polyamines Promote Amyloid-Beta Peptide Fibrillation and Modulate the Aggregation Pathways (Patent No. 2). Biophysical Journal, 104(2), Article 2. https://doi.org/10.1016/j.bpj.2012.11.2170

Luo, Jinghui, Yu, Chien-Hung, Yu, Huixin, Borstnar, Rok, Kamerlin, Shina C. L., Gräslund, Astrid, Abrahams, Jan Pieter, & Wärmländer, Sebastian K. T. S. (2013). Cellular Polyamines Promote Amyloid-Beta (A beta) Peptide Fibrillation and Modulate the Aggregation Pathways. ACS Chemical Neuroscience, 4(3), 454–462. https://doi.org/10.1021/cn300170x

Luo, Jinghui, Zwier, Raphael, & Abrahams, Jan Pieter. (2013). An efficient nanolitre-volume multi-channel device for highly viscous materials used in membrane protein crystallization. Journal of Applied Crystallography, 46, 829–831. https://doi.org/10.1107/s0021889813006742

Nederlof, Igor, Li, Yao Wang, van Heel, Marin, & Abrahams, Jan Pieter. (2013). Imaging protein three-dimensional nanocrystals with cryo-EM. Acta Crystallographica. Section D, Biological Crystallography, 69(Pt 5), 852–859. https://doi.org/10.1107/s0907444913002734

Nederlof, Igor, van Genderen, Eric, Li, Yao-Wang, & Abrahams, Jan Pieter. (2013). A Medipix quantum area detector allows rotation electron diffraction data collection from submicrometre three-dimensional protein crystals. Acta Crystallographica. Section D, Biological Crystallography, 69, 1223–1230. https://doi.org/10.1107/s0907444913009700

ten Bruggencate, Filip, Laroche, Fabrice, Zhang, Yue, Song, Guoqiang, Yin, Shougen, Abrahams, Jan Pieter, & Liu, Zunfeng. (2013). Visualizing the localization of transfection complexes during graphene nanoparticle-based transfection. Journal of Materials Chemistry B, 1(46), 6353–6358. https://doi.org/10.1039/c3tb21349h

Liu, Zunfeng, Galli, Federica, Waterreus, Willem-Jan, Meulenbroek, Elisabeth, Koning, Roman I., Lamers, Gerda E. M., Olsthoorn, René C. L., Pannu, Navraj, Oosterkamp, Tjerk H., Koster, Abraham J., Dame, Remus T., & Abrahams, Jan Pieter. (2012). Single-walled carbon nanotubes as scaffolds to concentrate DNA for the study of DNA-protein interactions. ChemPhysChem, 13(6), 1569–1575. https://doi.org/10.1002/cphc.201100896

Meulenbroek, Elisabeth M., Thomassen, Ellen A. J., Pouvreau, Laurice, Abrahams, Jan Pieter, Gruppen, Harry, & Pannu, Navraj S. (2012). Structure of a post-translationally processed heterodimeric double-headed Kunitz-type serine protease inhibitor from potato. Acta Crystallographica. Section D, Biological Crystallography, 68(Pt 7), 794–799. https://doi.org/10.1107/s090744491201222x

Abrahams, Jan-Pieter, Apweiler, Rolf, Balling, Rudi, Bertero, Michela G., Bujnicki, Janusz M., Chayen, Naomi E., Chène, Patrick, Corthals, Gary L., Dyląg, Tomasz, Förster, Friedrich, Heck, Albert J. R., Henderson, Peter J. F., Herwig, Ralf, Jehenson, Philippe, Kokalj, Sasa Jenko, Laue, Ernest, Legrain, Pierre, Martens, Lennart, Migliorini, Cristiano, et al. (2011). “4D Biology for health and disease” workshop report. New Biotechnology, 28(4), 291–293. https://doi.org/10.1016/j.nbt.2010.10.003

Jiang, Linhua, Georgieva, Dilyana, Nederlof, Igor, Liu, Zunfeng, & Abrahams, Jan Pieter. (2011). Image processing and lattice determination for three-dimensional nanocrystals. Microscopy and Microanalysis, 17(6), 879–885. https://doi.org/10.1017/s1431927611012244

Nederlof, Igor, Georgieva, Dilyana, & Abrahams, Jan Pieter. (2011). Electron diffraction of submicron 3D protein crystals [International Union of Crystallography]. Acta Crystallographica A-Foundation and Advances, 67, C228. https://doi.org/10.1107/s010876731109430x

Nicolopoulos, Stavros, Rauch, Edgar, Georgieva, D., & Abrahams, J. P. (2011). Low resolution electron crystallography challenges in organic and inorganic crystals with transmission electron microscope (TEM) [International Union of Crystallography]. Acta Crystallographica A-Foundation and Advances, 67, C188. https://doi.org/10.1107/s0108767311095304

Pannu, Navraj S., Waterreus, Willem Jan, Skubák, Pavol, Sikharulidze, Irakli, Abrahams, Jan Pieter, & de Graaff, Rudolf A. G. (2011). Recent advances in the CRANK software suite for experimental phasing. Acta Crystallographica. Section D, Biological Crystallography, 67(Pt 4), 331–337. https://doi.org/10.1107/s0907444910052224

Waterreus, Willem-Jan, Skubák, Pavol, Sikharulidze, Irakli, Abrahams, Jan Pieter, de Graaff, Rudolf A. G., & Pannu, Navraj S. (2011). Advances in the CRANK software suite for automated crystal structure solution [International Union of Crystallography]. Acta Crystallographica A-Foundation and Advances, 67, C659. https://doi.org/10.1107/s0108767311083346

Abrahams, Jan Pieter. (2010). The strong phase object approximation may allow extending crystallographic phases of dynamical electron diffraction patterns of 3D protein nano-crystals. Zeitschrift Für Kristallographie - Crystalline Materials, 225(2-3), 67–76. https://doi.org/10.1524/zkri.2010.1216

Jiang, Linhua, Liu, Zunfeng, Georgieva, Dilyana, Kuil, Maxim E., & Abrahams, Jan Pieter. (2010). A novel approximation method of CTF amplitude correction for 3D single particle reconstruction. Ultramicroscopy, 110(4), 350–358. https://doi.org/10.1016/j.ultramic.2010.01.011

Liu, Zunfeng, Galli, Federica, Janssen, Kjeld G. H., Jiang, Linhua, van der Linden, Heiko J., de Geus, Daniël C., Voskamp, Patrick, Kuil, Maxim E., Olsthoorn, René C. L., Oosterkamp, Tjerk H., Hankemeier, Thomas, & Abrahams, Jan Pieter. (2010). Stable Single-Walled Carbon Nanotube-Streptavidin Complex for Biorecognition. Journal of Physical Chemistry C, 114(10), 4345–4352. https://doi.org/10.1021/jp911441d

Liu, Zunfeng, Jiang, Linhua, Galli, Federica, Nederlof, Igor, Olsthoorn, René C. L., Lamers, Gerda E. M., Oosterkamp, Tjerk. H., & Abrahams, Jan Pieter. (2010). A Graphene Oxide˙Streptavidin Complex for Biorecognition - Towards Affinity Purification. Advanced Functional Materials, 20(17), 2857–2865. https://doi.org/10.1002/adfm.201000761

Sikharulidze, I., Van Gastel, R., Schramm, S., Abrahams, J. P., Poelsema, B., Trom, R. M., & Van der Molen, S. J. (2010). Improved Imaging in low Energy Electron Microscopy and Photo Emission Electron Microscopy Using Medipix2 Pixel Detector. In Leroy, Claude; Rancoita, Pier-Giorgio; Barone, Michele; Gaddi, Andrea; Price, Larry; Ruchti, Randal (Ed.), Astroparticle, Particle, Space Physics, Radiation Interaction, Detectors and Medical Physics Applications. World Scientific. https://doi.org/10.1142/9789814307529_0023

Abrahams, Jan Pieter, Jiang, Linhua, Sikhuralidze, Irakli, Nederloff, Igor, Zandbergen, Henny, & Georgieva, Dilyana. (2009). Macromolecular Electron Crystallography [International Union of Crystallography]. Acta Crystallographica A-Foundation and Advances, 65, S7. https://doi.org/10.1107/s0108767309099875

de Geus, Daniël C., Thomassen, Ellen A. J., Hagedoorn, Peter-Leon, Pannu, Navraj S., van Duijn, Esther, & Abrahams, Jan Pieter. (2009). Crystal Structure of Chlorite Dismutase, a Detoxifying Enzyme Producing Molecular Oxygen. Journal of Molecular Biology, 387(1), 192–206. https://doi.org/10.1016/j.jmb.2009.01.036

de Geus, Daniël C., van Roon, Anne-Marie M., Thomassen, Ellen A. J., Hokke, Cornelis H., Deelder, André M., & Abrahams, Jan Pieter. (2009). Characterization of a diagnostic Fab fragment binding trimeric Lewis X. Proteins: Structure, Function, and Bioinformatics, 76(2), 439–447. https://doi.org/10.1002/prot.22356

De Geus, D. C., Thomassen, E. A. J., Hagedoorn, P. L., Pannu, N. S., & Abrahams, J. P. (2009). 2VXH: The Crystal Structure Of Chlorite Dismutase: A Detox Enzyme Producing Molecular Oxygen. Worldwide Protein Data Bank, 2VXH. https://doi.org/10.2210/pdb2vxh/pdb

De Geus, D. C., Van Roon, A. M. M., Thomassen, E. A. J., Hokke, C. H., Deelder, A. M., & Abrahams, J. P. (2009). 2VQ1: Anti Trimeric Lewis X Fab54-5C10-A. Worldwide Protein Data Bank, 2VQ1. https://doi.org/10.2210/pdb2vq1/pdb

Jiang, Linhua, Georgieva, Dilyana, IJspeert, Kim, & Abrahams, Jan Pieter. (2009). An intelligent peak search program for digital electron diffraction images of 3D nano-crystals (Qiu, Peihua; Yiu, Cedric; Zhang, Hua; Wen, Xianbin, Ed.). IEEE. https://doi.org/10.1109/cisp.2009.5301421

Jiang, Linhua, Georgieva, Dilyana, Zandbergen, Henny W., & Abrahams, Jan Pieter. (2009). Unit-cell determination from randomly oriented electron-diffraction patterns. Acta Crystallographica. Section D, Biological Crystallography, 65(Pt 7), 625–632. https://doi.org/10.1107/s0907444909003163

Meulenbroek, Elisabeth M., Paspaleva, Keti, Thomassen, Ellen A. J., Abrahams, Jan Pieter, Goosen, Nora, & Pannu, Navraj S. (2009). Involvement of a carboxylated lysine in UV damage endonuclease. Protein Science, 18(3), 549–558. https://doi.org/10.1002/pro.54

Pannu, Navraj S., Ravelli, Raimond B. G., & Abrahams, Pieter. (2009). The Max-Inf2/Lorentz Center workshop on New algorithms in macromolecular crystallography and electron microscopy. Acta Crystallographica. Section D, Biological Crystallography, 65, 623–624. https://doi.org/10.1107/s0907444909020861

van Gastel, R., Sikharulidze, I., Schramm, S., Abrahams, J. P., Poelsema, B., Tromp, R. M., & van der Molen, S. J. (2009). Medipix 2 detector applied to low energy electron microscopy. Ultramicroscopy, 110(1), 33–35. https://doi.org/10.1016/j.ultramic.2009.09.002

van Haren, Jeffrey, Draegestein, Katharina, Keijzer, Nanda, Abrahams, Jan Pieter, Grosveld, Frank, Peeters, Pieter Johan, Moechars, Dieder, & Galjart, Niels. (2009). Mammalian Navigators are Microtubule Plus-End Tracking Proteins that can Reorganize the Cytoskeleton to Induce Neurite-Like Extensions. Cell Motility and the Cytoskeleton, 66(10), 824–838. https://doi.org/10.1002/cm.20370

Waterreus, Willem-Jan, Pannu, Navraj, Skubák, Pavol, Sikharulidze, Irakli, Abrahams, Jan Pieter, & de Graaff, R. A. G. (2009). Recent Advances in CRANK [International Union of Crystallography]. Acta Crystallographica A-Foundation and Advances, 65, S160. https://doi.org/10.1107/s0108767309096743

Abrahams, Jan Pieter, Georgieva, Dilyana, Jiang, Linhua, & Zandbergen, Henny W. (2008). Prospects for structure solution by electron diffraction of three-dimensional protein crystals [International Union of Crystallography]. Acta Crystallographica A-Foundation and Advances, 64, C75–C76. https://doi.org/10.1107/s0108767308097584

de Geus, Daniël C., Thomassen, Ellen A. J., van der Feltz, Clarisse L., & Abrahams, Jan Pieter. (2008). Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of chlorite dismutase: a detoxifying enzyme producing molecular oxygen. Acta Crystallographica Section F, 64(Pt 8), 730–732. https://doi.org/10.1107/s1744309108020551

Jiang, L., & Abrahams, J. P. (2008). 3BBU: The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex. Worldwide Protein Data Bank, 3BBU. https://doi.org/10.2210/pdb3bbu/pdb

Jiang, L., & Abrahams, J. P. (2008). 3BBX: The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex. Worldwide Protein Data Bank, 3BBX. https://doi.org/10.2210/pdb3bbx/pdb

Jiang, L., & Abrahams, J. P. (2008). 3BBV: The tRNA(phe) fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex. Worldwide Protein Data Bank, 3BBV. https://doi.org/10.2210/pdb3bbv/pdb

Jiang, Linhua, Schaffitzel, Christiane, Bingel-Erlenmeyer, Rpuven, Ban, Nenad, Korber, Philipp, Koning, Roman I., Plaisier, Jasper R., & Abrahams, Jan Pieter. (2008). EMD-1455: Recycling of Aborted Ribosomal 50S Subunit-Nascent Chain-tRNA Complexes by the Heat Shock Protein Hsp15. Journal of Molecular Biology, 386(5), 1357–1367. https://doi.org/10.1016/j.jmb.2008.10.079

Jiang, L., Schaffitzel, C., Bingel-Erlenmeyer, R., Ban, N., Korber, P., Koning, R. I., Plaisier, J. R., & Abrahams, J. P. (2008). EMD-1456.map. Electron Microscopy Data Bank, EMD–1456.

Meulenbroek, E. M., Paspaleva, K., Thomassen, E. A. J., Abrahams, J. P., Goosen, N., & Pannu, N. S. (2008). 3C0S: UVDE 3 metals. Worldwide Protein Data Bank, 3C0S. https://doi.org/10.2210/pdb3c0s/pdb

Meulenbroek, E. M., Paspaleva, K., Thomassen, E. A. J., Abrahams, J. P., Goosen, N., & Pannu, N. S. (2008). 3C0Q: Uvde E175a. Worldwide Protein Data Bank, 3C0Q. https://doi.org/10.2210/pdb3c0q/pdb

Meulenbroek, E. M., Paspaleva, K., Thomassen, E. A. J., Abrahams, J. P., Goosen, N., & Pannu, N. S. (2008). 3C0L: Uvde K229r. Worldwide Protein Data Bank, 3C0L. https://doi.org/10.2210/pdb3c0l/pdb

Meulenbroek, E. M., Paspaleva, K., Thomassen, E. A. J., Abrahams, J. P., Goosen, N., & Pannu, N. S. (2008). 3BZG: UVDE pH4.4. Worldwide Protein Data Bank, 3BZG. https://doi.org/10.2210/pdb3bzg/pdb

Meulenbroek, E. M., Paspaleva, K., Thomassen, E. A. J., Abrahams, J. P., Goosen, N., & Pannu, N. S. (2008). 3BZJ: Uvde K229l. Worldwide Protein Data Bank, 3BZJ. https://doi.org/10.2210/pdb3bzj/pdb

Schaffitzel, C., Oswald, M., Berger, I., Ishikawa, T., Abrahams, J. P., Koerten, H. K., Koning, R. I., & Ban, N. (2008). EMD-1250.map. Electron Microscopy Data Bank, EMD–1250.

Schaffitzel, C., Oswald, M., Berger, I., Ishikawa, T., Abrahams, J. P., Koerten, H. K., Koning, R. I., & Ban, N. (2008). EMD-1251: Structure of the E. coli signal recognition particle bound to a translating ribosome. Electron Microscopy Data Bank, EMD–1251.

Zovko, Sandra, Abrahams, Jan Pieter, Koster, Abraham J., Galjart, Niels, & Mommaas, A. Mieke. (2008). Microtubule plus-end conformations and dynamics in the periphery of interphase mouse fibroblasts. Molecular Biology of the Cell, 19(7), 3138–3146. https://doi.org/10.1091/mbc.e07-07-0681

Georgieva, Dilyana G., Kuil, Maxim E., Oosterkamp, Tjerk H., Zandbergen, Henny W., & Abrahams, Jan Pieter. (2007). Heterogeneous nucleation of three-dimensional protein nanocrystals. Acta Crystallographica. Section D, Biological Crystallography, 63(Pt 5), 564–570. https://doi.org/10.1107/s0907444907007810

Paspaleva, Keti, Thomassen, Ellen, Pannu, Navraj S., Iwai, Shigenori, Moolenaar, Geri F., Goosen, Nora, & Abrahams, Jan Pieter. (2007). Crystal structure of the DNA repair enzyme ultraviolet damage endonuclease. Structure, 15(10), 1316–1324. https://doi.org/10.1016/j.str.2007.05.010