Prof. Dr. Dieter Ebert

Thivolle, A., & Ebert, D. (2025). Matching-Allele-Models explain host specificity and high diversity of Collagen-Like Proteins in a virulent pathogen [Posted-content]. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2025.03.22.644704

Angst, Pascal, Ebert, Dieter, & Fields, Peter D. (2025). Variation in genome architecture and epigenetic modification across the microsporidia phylogeny [Posted-content]. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2025.01.20.633886

Mathieu-Bégné, Eglantine, Gattis, Sabrina, & Ebert, Dieter. (2024). Genetic basis of resistance in hosts facing alternative infection strategies by a virulent bacterial pathogen [Journal-article]. G3: Genes, Genomes, Genetics. https://doi.org/10.1093/g3journal/jkae302

Naser-Khdour, Suha, Scheuber, Fabian, Fields, Peter D, & Ebert, Dieter. (2024). The Evolution of Extreme Genetic Variability in a Parasite-Resistance Complex [Journal-article]. Genome Biology and Evolution, 16(10). https://doi.org/10.1093/gbe/evae222

Joana L. Santos, Fabienne Nick, Nikko Adhitama, Peter D. Fields, Jonathon H. Stillman, Yasuhiko Kato, Hajime Watanabe, & Dieter Ebert. (2024). Trehalose mediates salinity-stress tolerance in natural populations of a freshwater crustacean. Current Biology, 34(18), 4160–4169. https://doi.org/10.1016/j.cub.2024.07.082

Naser-Khdour, Suha, Scheuber, Fabian, Fields, Peter D., & Ebert, Dieter. (2024). The Evolution of Extreme Genetic Variability in a Parasite-Resistance Complex in a Planktonic Crustacean [Posted-content]. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2024.08.09.607325

Santhosh, Santhosh, Ebert, Dieter, & Janicke, Tim. (2024). Sperm competition favours intermediate sperm size in a hermaphrodite [Journal-article]. Journal of Evolutionary Biology, 37(7), 829–838. https://doi.org/10.1093/jeb/voae058

Angst, Pascal, Haag, Christoph R, Ben-Ami, Frida, Fields, Peter D, & Ebert, Dieter. (2024). Genome-Wide Allele Frequency Changes Reveal That Dynamic Metapopulations Evolve Differently [Journal-article]. Molecular Biology and Evolution, 41(7). https://doi.org/10.1093/molbev/msae128

Otte, Kathrin A., Fredericksen, Maridel, Fields, Peter, Fröhlich, Thomas, Laforsch, Christian, & Ebert, Dieter. (2024). The cuticle proteome of a planktonic crustacean [Journal-article]. Proteomics, 24(14). https://doi.org/10.1002/pmic.202300292

Cornetti, Luca, Fields, Peter D., Du Pasquier, Louis, & Ebert, Dieter. (2024). Long-term balancing selection for pathogen resistance maintains trans-species polymorphisms in a planktonic crustacean [Journal-article]. Nature Communications, 15(1). https://doi.org/10.1038/s41467-024-49726-8

Huessy, Benjamin, Bumann, Dirk, & Ebert, Dieter. (2024). Ectopical expression of bacterial collagen-like protein supports its role as adhesin in host–parasite coevolution. Royal Society Open Science, 11(4). https://doi.org/10.1098/rsos.231441

Van de Schoot, Evert, Merckx, Thomas, Ebert, Dieter, Wesselingh, Renate A., Altermatt, Florian, & Van Dyck, Hans. (2024). Evolutionary change in flight-to-light response in urban moths comes with changes in wing morphology [Journal-article]. Biology Letters, 20(3). https://doi.org/10.1098/rsbl.2023.0486

Santos, Joana L., Nick, Fabienne, Adhitama, Nikko, Fields, Peter D., Stillman, Jonathon H., Kato, Yasuhiko, Watanabe, Hajime, & Ebert, Dieter. (2024). Trehalose mediates salinity-stress tolerance in a crustacean [Posted-content]. In biorxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2024.02.09.579427

Thivolle, Alix, Paljakka, Marjut, Ebert, Dieter, & Fields, Peter D. (2024). The genome of Pasteuria ramosa reveals a high turnover rate of collagen-like genes [Posted-content]. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2024.02.09.579640

Angst, Pascal, & Ebert, Dieter. (2024). Mikrosporidien-Genome als Fenster zu deren Evolution. BioSpektrum, 30, 49–51. https://doi.org/10.1007/s12268-024-2080-6

Santos, Joana L., & Ebert, Dieter. (2023). The limits of stress-tolerance for zooplankton resting stages in freshwater ponds. Oecologia, 203(3-4), 453–465. https://doi.org/10.1007/s00442-023-05478-8

Tadiri, Christina P., & Ebert, Dieter. (2023). The role of temperature in the start of seasonal infectious disease epidemics. Oikos, 2023(11). https://doi.org/10.1111/oik.10014

Angst, Pascal, Pombert, Jean-François, Ebert, Dieter, & Fields, Peter D. (2023). Near chromosome-level genome assembly of the microsporidium Hamiltosporidium tvaerminnensis. G3: Genes, Genomes, Genetics, 13(10). https://doi.org/10.1093/g3journal/jkad185

Dexter, Eric, Fields, Peter D., & Ebert, Dieter. (2023). Uncovering the Genomic Basis of Infection Through Co-genomic Sequencing of Hosts and Parasites. Molecular Biology and Evolution, 40(7). https://doi.org/10.1093/molbev/msad145

Dexter, Eric, Fields, Peter D., & Ebert, Dieter. (2023). Uncovering the genomic basis of infection through co-genomic sequencing of hosts and parasites [Posted-content]. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2022.12.05.519109

Angst, Pascal, Ebert, Dieter, & Fields, Peter D. (2023). Population genetic analysis of the microsporidium Ordospora colligata reveals the role of natural selection and phylogeography on its extremely compact and reduced genome. G3: Genes, Genomes, Genetics, 13(3). https://doi.org/10.1093/g3journal/jkad017

Fredericksen, Maridel, Fields, Peter D., Du Pasquier, Louis, Ricci, Virginie, & Ebert, Dieter. (2023). QTL study reveals candidate genes underlying host resistance in a Red Queen model system. PLoS Genetics, 19(2). https://doi.org/10.1371/journal.pgen.1010570

Angst, Pascal, Ameline, Camille, Haag, Christoph R., Ben-Ami, Frida, Ebert, Dieter, & Fields, Peter D. (2023). Genetic Drift Shapes the Evolution of a Highly Dynamic Metapopulation. Molecular Biology and Evolution, 39(12), msac264. https://doi.org/10.1093/molbev/msac264

Huessy, Benjamin, Bumann, Dirk, & Ebert, Dieter. (2023). Ectopical expression of bacterial collagen-like protein supports its role as adhesin in host-parasite coevolution. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2023.07.14.549037

Halter, M., Du Pasquier, L., Ebert, D., & Fields, P. D. (2022, March 13). A genomic analysis of parasite-mediated population differentiation in a metapopulation [Posted-content]. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2022.03.10.483675

Amandine, Cornille, Ebert, Dieter, Stukenbrock, Eva, Rodríguez de la Vega, Ricardo C., Tiffin, Peter, Croll, Daniel, & Tellier, Aurélien. (2022). Unraveling coevolutionary dynamics using ecological genomics. Trends in Genetics, 38(10), 1003–1012. https://doi.org/10.1016/j.tig.2022.05.008

Ameline, Camille, Voegtli, Felix, Andras, Jason, Dexter, Eric, Engelstädter, Jan, & Ebert, Dieter. (2022). Genetic slippage after sex maintains diversity for parasite resistance in a natural host population. Science Advances, 8(46), eabn0051. https://doi.org/10.1126/sciadv.abn0051

Angst, Pascal, Ebert, Dieter, & Fields, Peter D. (2022). Demographic history shapes genomic variation in an intracellular parasite with a wide geographical distribution. Molecular Ecology, 31(9), 2528–2544. https://doi.org/10.1111/mec.16419

de Albuquerque, Nathalia R. M., Haag, Karen L., Fields, Peter D., Cabalzar, Andrea, Ben-Ami, Frida, Pombert, Jean-François, & Ebert, Dieter. (2022). A new microsporidian parasite, Ordospora pajunii sp. nov (Ordosporidae), of Daphnia longispina highlights the value of genomic data for delineating species boundaries. The Journal of Eukaryotic Microbiology, 69(3), e12902. https://doi.org/10.1111/jeu.12902

Duneau, David, Möst, Markus, & Ebert, Dieter. (2022). Evolution of sperm morphology in a crustacean genus with fertilization inside an open brood pouch. Peer Community Journal, 2, e63. https://doi.org/10.24072/pcjournal.182

Ebert, Dieter. (2022). Daphnia as a versatile model system in ecology and evolution. EvoDevo, 13(1), 16. https://doi.org/10.1186/s13227-022-00199-0

Fields, Peter D., McTaggart, Seanna, Reisser, Céline M. O., Haag, Christoph, Palmer, William H., Little, Tom J., Ebert, Dieter, & Obbard, Darren J. (2022). Population-Genomic Analysis Identifies a Low Rate of Global Adaptive Fixation in the Proteins of the Cyclical Parthenogen Daphnia magna. Molecular Biology and Evolution, 39(3), msac048. https://doi.org/10.1093/molbev/msac048

Heim, Vital, Luescher, Daniel, Hottinger, Juergen, & Ebert, Dieter. (2022). Development and validation of a drill attachment for faster and safer deployments of fin-mounted geolocators in large-bodied sharks. Animal Biotelemetry, 10(1), ARTN 33. https://doi.org/10.1186/s40317-022-00304-z

Luo, Mingyu, Wang, Shaopeng, Saavedra, Serguei, Ebert, Dieter, & Altermatt, Florian. (2022). Multispecies coexistence in fragmented landscapes. Proceedings of the National Academy of Sciences of the United States of America, 119(37), e2201503119. https://doi.org/10.1073/pnas.2201503119

Santos, Joana L., & Ebert, Dieter. (2022). The effects of temperature and host-parasite interactions on parasite persistence in a planktonic crustacean. Journal of Freshwater Ecology, 37(1), 555–568. https://doi.org/10.1080/02705060.2022.2134219

Santos, Joana L., & Ebert, Dieter. (2022). Trehalose provisioning in Daphnia resting stages reflects local adaptation to the harshness of diapause conditions. Biology Letters, 18(2), 20210615. https://doi.org/10.1098/rsbl.2021.0615

Van Damme, Kay, Cornetti, Luca, Fields, Peter D., & Ebert, Dieter. (2022). Whole-Genome Phylogenetic Reconstruction as a Powerful Tool to Reveal Homoplasy and Ancient Rapid Radiation in Waterflea Evolution. Systematic Biology, 71(4), 777–787. https://doi.org/10.1093/sysbio/syab094

Haaland, T. R., Ebert, D., & Kokko, H. (2021, October 22). Sex differences in the strength of selection under facultative sex [Posted-content]. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2021.10.21.465271

Ameline, C., Vögtli, F., Andras, J., Dexter, E., Engelstädter, J., & Ebert, D. (2021, July 12). Genetic slippage after sex maintains diversity for parasite resistance in a natural host population [Posted-content]. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2021.07.11.451958

Ameline, Camille, Bourgeois, Yann, Vögtli, Felix, Savola, Eevi, Andras, Jason, Engelstädter, Jan, & Ebert, Dieter. (2021). A two-locus system with strong epistasis underlies rapid parasite-mediated evolution of host resistance. Molecular Biology and Evolution, 38(4), 1512–1528. https://doi.org/10.1093/molbev/msaa311

Ameline, Camille, Bourgeois, Yann, Vögtli, Felix, Savola, Eevi, Andras, Jason, Engelstädter, Jan, & Ebert, Dieter. (2021). Erratum to: A Two-Locus System with Strong Epistasis Underlies Rapid Parasite-Mediated Evolution of Host Resistance. Molecular Biology and Evolution, 38(6), 2674. https://doi.org/10.1093/molbev/msab076

Bourgeois, Yann, Fields, Peter D., Bento, Gilberto, & Ebert, Dieter. (2021). Balancing Selection for Pathogen Resistance Reveals an Intercontinental Signature of Red Queen Coevolution. Molecular Biology and Evolution, 38(11), 4918–4933. https://doi.org/10.1093/molbev/msab217

Cornetti, Luca, & Ebert, Dieter. (2021). No evidence for genetic sex determination in Daphnia magna. Royal Society Open Science, 8(6), 202292. https://doi.org/10.1098/rsos.202292

Cornetti, Luca, Fields, Peter D., & Ebert, Dieter. (2021). Genomic characterization of selfing in the cyclic parthenogen Daphnia magna. Journal of Evolutionary Biology, 34(5), 792–802. https://doi.org/10.1111/jeb.13780

Fredericksen, Maridel, Ameline, Camille, Krebs, Michelle, Hüssy, Benjamin, Fields, Peter D., Andras, Jason P., & Ebert, Dieter. (2021). Infection phenotypes of a coevolving parasite are highly diverse, structured, and specific. Evolution: International Journal of Organic Evolution, 75(10), 2540–2554. https://doi.org/10.1111/evo.14323

Vega, Fernando E., Emche, Sarah, Shao, Jonathan, Simpkins, Ann, Summers, Ryan M., Mock, Meredith B., Ebert, Dieter, Infante, Francisco, Aoki, Sayaka, & Maul, Jude E. (2021). Cultivation and Genome Sequencing of Bacteria Isolated From the Coffee Berry Borer (Hypothenemus hampei), With Emphasis on the Role of Caffeine Degradation. Frontiers in Microbiology, 12, 644768. https://doi.org/10.3389/fmicb.2021.644768

Dubart, M., David, P., Ben-Ami, F., Haag, C. R., Pajunen, V. I., & Ebert, D. (2020, July 10). Species coexistence and overlapping distributions in a metacommunity are compatible with niche differences and competition at a local scale [Posted-content]. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2020.07.10.196758

Ameline, C., Bourgeois, Y., Vögtli, F., Savola, E., Andras, J., Engelstädter, J., & Ebert, D. (2020, June 12). A two-locus system with strong epistasis underlies rapid parasite-mediated evolution of host resistance [Posted-content]. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2020.06.11.145391

Duneau, D., Altermatt, F., Ferdy, J.-B., Ben-Ami, F., & Ebert, D. (2020, February 5). Estimation of the propensity for sexual selection in a cyclical parthenogen [Posted-content]. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2020.02.05.935148

Duneau, D., Möst, M., & Ebert, D. (2020, February 2). Evolution of sperm morphology in a crustacean genus with fertilization inside an open brood pouch [Posted-content]. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2020.01.31.929414

Andras, Jason P., Fields, Peter D., Du Pasquier, Louis, Fredericksen, Maridel, & Ebert, Dieter. (2020). Genome-Wide Association Analysis Identifies a Genetic Basis of Infectivity in a Model Bacterial Pathogen. Molecular Biology and Evolution, 37(12), 3439–3452. https://doi.org/10.1093/molbev/msaa173

Bento, Gilberto, Fields, Peter D., Duneau, David, & Ebert, Dieter. (2020). An alternative route of bacterial infection associated with a novel resistance locus in the Daphnia-Pasteuria host-parasite system. Heredity, 125(4), 173–183. https://doi.org/10.1038/s41437-020-0332-x

de Albuquerque, Nathalia Rammé Medeiros, Ebert, Dieter, & Haag, Karen Luisa. (2020). Transposable element abundance correlates with mode of transmission in microsporidian parasites. Mobile DNA, 11, 19. https://doi.org/10.1186/s13100-020-00218-8

Ebert, Dieter, & Fields, Peter D. (2020). Host-parasite co-evolution and its genomic signature. Nature reviews. Genetics, 21(12), 754–768. https://doi.org/10.1038/s41576-020-0269-1

Haag, Karen L., Pombert, Jean-François, Sun, Yukun, de Albuquerque, Nathalia Rammé M., Batliner, Brendan, Fields, Peter, Lopes, Tiago Falcon, & Ebert, Dieter. (2020). Microsporidia with Vertical Transmission Were Likely Shaped by Nonadaptive Processes. Genome Biology and Evolution, 12(1), 3599–3614. https://doi.org/10.1093/gbe/evz270

Ho, Eddie K. H., Macrae, Fenner, Latta, Leigh C., McIlroy, Peter, Ebert, Dieter, Fields, Peter D., Benner, Maia J., & Schaack, Sarah. (2020). High and Highly Variable Spontaneous Mutation Rates in Daphnia. Molecular Biology and Evolution, 37(11), 3258–3266. https://doi.org/10.1093/molbev/msaa142

Cabalzar, A. P., Fields, P. D., Kato, Y., Watanabe, H., & Ebert, D. (2019). Parasite-mediated selection in a natural metapopulation of Daphnia magna. Molecular Ecology, 28(21), 4770–4785. https://doi.org/10.1111/mec.15260

Brun, Nadja R., Fields, Peter D., Horsfield, Samuel, Mirbahai, Leda, Ebert, Dieter, Colbourne, John K., & Fent, Karl. (2019). Mixtures of Aluminum and Indium Induce More than Additive Phenotypic and Toxicogenomic Responses in Daphnia magna. Environmental Science and Technology, 53(3), 1639–1649. https://doi.org/10.1021/acs.est.8b05457

Cornetti, Luca, Fields, Peter D., Van Damme, Kay, & Ebert, Dieter. (2019). A fossil-calibrated phylogenomic analysis of Daphnia and the Daphniidae. Molecular Phylogenetics and Evolution, 137, 250–262. https://doi.org/10.1016/j.ympev.2019.05.018

Czypionka, Till, Fields, Peter D., Routtu, Jarkko, van den Berg, Edwin, Ebert, Dieter, & De Meester, Luc. (2019). The genetic architecture underlying diapause termination in a planktonic crustacean. Molecular Ecology, 28(5), 998–1008. https://doi.org/10.1111/mec.15001

Dukić, Marinela, Berner, Daniel, Haag, Christoph R., & Ebert, Dieter. (2019). How clonal are clones? A quest for loss of heterozygosity during asexual reproduction in Daphnia magna. Journal of Evolutionary Biology, 32(6), 619–628. https://doi.org/10.1111/jeb.13443

Hall, Matthew D., Routtu, Jarkko, & Ebert, Dieter. (2019). Dissecting the genetic architecture of a stepwise infection process. Molecular Ecology, 28(17), 3942–3957. https://doi.org/10.1111/mec.15166

Ho, Eddie K. H., Macrae, Fenner, Latta, Leigh C., Benner, Maia J., Sun, Cheng, Ebert, Dieter, & Schaack, Sarah. (2019). Intraspecific Variation in Microsatellite Mutation Profiles in Daphnia magna. Molecular Biology and Evolution, 36(9), 1942–1954. https://doi.org/10.1093/molbev/msz118

Martin-Creuzburg, Dominik, Coggins, B. L., Ebert, Dieter, & Yampolsky, Lev Y. (2019). Rearing Temperature and Fatty Acid Supplementation Jointly Affect Lipid Fluorescence Polarization and Heat Tolerance in Daphnia. Physiological and Biochemical Zoology, 92(4), 408–418. https://doi.org/10.1086/704365

Mushegian, Alexandra A., Arbore, Roberto, Walser, Jean-Claude, & Ebert, Dieter. (2019). Data from: Environmental sources of bacteria and genetic variation in behavior influence host-associated microbiota. Dryad, 1. https://doi.org/10.5061/dryad.g75r459

Mushegian, Alexandra A., Arbore, Roberto, Walser, Jean-Claude, & Ebert, Dieter. (2019). Environmental Sources of Bacteria and Genetic Variation in Behavior Influence Host-Associated Microbiota. Applied and Environmental Microbiology, 85(8), e01547–18. https://doi.org/10.1128/aem.01547-18

Narr, Charlotte F., Ebert, Dieter, Bastille-Rousseau, Guillaume, & Frost, Paul C. (2019). Nutrient availability affects the prevalence of a microsporidian parasite. Journal of Animal Ecology, 88(4), 579–590. https://doi.org/10.1111/1365-2656.12945

Savola, Eevi, & Ebert, Dieter. (2019). Assessment of parasite virulence in a natural population of a planktonic crustacean. BMC Ecology, 19(1), 14. https://doi.org/10.1186/s12898-019-0230-3

Seefeldt, Leonie, & Ebert, Dieter. (2019). Temperature - versus precipitation-limitation shape local temperature tolerance in a Holarctic freshwater crustacean. Proceedings of the Royal Society. Series B, Biological Sciences, 286(1907), 20190929. https://doi.org/10.1098/rspb.2019.0929

Martin-Creuzburg, D., Coggins, B. L., Ebert, D., & Yampolsky, L. Y. (2018, April 6). Rearing temperature and fatty acid supplementation jointly affect membrane fluidity and heat tolerance in<i>Daphnia</i> [Posted-content]. Cold Spring Harbor Laboratory. https://doi.org/10.1101/295998

Mushegian, A. A., Arbore, R., Walser, J.-C., & Ebert, D. (2018, April 6). Environmental sources of bacteria and genetic variation in behavior influence host-associated microbiota [Posted-content]. Cold Spring Harbor Laboratory. https://doi.org/10.1101/296228

Andras, Jason P., Fields, Peter D., & Ebert, Dieter. (2018). Spatial population genetic structure of a bacterial parasite in close coevolution with its host. Molecular Ecology, 27(6), 1371–1384. https://doi.org/10.1111/mec.14545

Booksmythe, Isobel, Gerber, Nina, Ebert, Dieter, & Kokko, Hanna. (2018). Daphnia females adjust sex allocation in response to current sex ratio and density. Ecology Letters, 21(5), 629–637. https://doi.org/10.1111/ele.12929

Ebert, Bettina, Ebert, Dieter, Koebsch, Katrin, Maser, Edmund, & Kisiela, Michael. (2018). Carbonyl reductases from Daphnia are regulated by redox cycling compounds. Febs Journal, 285(15), 2869–2887. https://doi.org/10.1111/febs.14578

Ebert, Dieter. (2018). Open questions: what are the genes underlying antagonistic coevolution? BMC Biology, 16(1), 114. https://doi.org/10.1186/s12915-018-0583-7

Fields, Peter D., Obbard, Darren J., McTaggart, Seanna J., Galimov, Yan, Little, Tom J., & Ebert, Dieter. (2018). Mitogenome phylogeographic analysis of a planktonic crustacean. Molecular Phylogenetics and Evolution, 129, 138–148. https://doi.org/10.1016/j.ympev.2018.06.028

Gerber, Nina, Kokko, Hanna, Ebert, Dieter, & Booksmythe, Isobel. (2018). Daphnia invest in sexual reproduction when its relative costs are reduced. Proceedings of the Royal Society B-Biological Sciences, 285(1871), 1–9. https://doi.org/10.1098/rspb.2017.2176

Mushegian, Alexandra, Walser, Jean-Claude, Sullam, Karen E., & Ebert, Dieter. (2018). The microbiota of diapause: how host-microbe associations are formed after dormancy in an aquatic crustacean. Journal of Animal Ecology, 87(2), 400–413. https://doi.org/10.1111/1365-2656.12709

Preiswerk, David, Walser, Jean-Claude, & Ebert, Dieter. (2018). Temporal dynamics of microbiota before and after host death. Isme Journal, 12(8), 2076–2085. https://doi.org/10.1038/s41396-018-0157-2

Sison-Mangus, Marilou P., Metzger, César M. J. A., & Ebert, Dieter. (2018). Host genotype-specific microbiota do not influence the susceptibility of D. magna to a bacterial pathogen. Scientific Reports, 8(1), 9407. https://doi.org/10.1038/s41598-018-27681-x

Sullam, Karen E., Pichon, Samuel, Schaer, Tobias M. M., & Ebert, Dieter. (2018). The Combined Effect of Temperature and Host Clonal Line on the Microbiota of a Planktonic Crustacean. Microbial Ecology, 76(2), 506–517. https://doi.org/10.1007/s00248-017-1126-4

Toenshoff, Elena R., Fields, Peter D., Bourgeois, Yann X., & Ebert, Dieter. (2018). The End of a 60-year Riddle: Identification and Genomic Characterization of an Iridovirus, the Causative Agent of White Fat Cell Disease in Zooplankton. G3-Genes Genomes Genetics, 8(4), 1259–1272. https://doi.org/10.1534/g3.117.300429

Bento, Gilberto, Routtu, Jarkko, Fields, Peter D., Bourgeois, Yann X., Du Pasquier, Louis, & Ebert, Dieter. (2017). The genetic basis of resistance and matching-allele interactions of a host-parasite system: The Daphnia magna-Pasteuria ramosa model. PLoS Genetics, 13(2), e1006596. https://doi.org/10.1371/journal.pgen.1006596

Bourgeois, Yann X., Roulin, Anne C., Muller, Kristina, & Ebert, Dieter. (2017). Parasitism drives host genome evolution: Insights from the Pasteuria ramosa-Daphnia magna system. Evolution, 71(4), 1106–1113. https://doi.org/10.1111/evo.13209

Brun, Nadja R., Beenakker, Margreet M. T., Hunting, Ellard R., Ebert, Dieter, & Vijver, Martina G. (2017). Brood pouch-mediated polystyrene nanoparticle uptake during Daphnia magna embryogenesis. Nanotoxicology, 11(8), 1059–1069. https://doi.org/10.1080/17435390.2017.1391344

Hall, Matthew D., Bento, Gilberto, & Ebert, Dieter. (2017). The Evolutionary Consequences of Stepwise Infection Processes. Trends in Ecology & Evolution, 32(8), 612–623. https://doi.org/10.1016/j.tree.2017.05.009

Krebs, Michelle, Routtu, Jarkko, & Ebert, Dieter. (2017). QTL mapping of a natural genetic polymorphism for long-term parasite persistence in Daphnia populations. Parasitology, 144(13), 1686–1694. https://doi.org/10.1017/s0031182017001032

Mushegian, Alexandra A., & Ebert, Dieter. (2017). Presence of microbiota reverses the relative performance of Daphnia on two experimental diet. Zoology, 125, 29–31. https://doi.org/10.1016/j.zool.2017.07.007

Ebert, D.D., Donkin, L., Andersson, G., Andrews, G., Berger, T., Carlbring, P., Rozenthal, A., Choi, I., Laferton, J.A.C., Johansson, R., Kleiboer, A., Lange, A., Lehr, D., Reins, J.A., Funk, B., Newby, J., Perini, S., Riper, H., Ruwaard, J., et al. (2016). Does Internet-based guided-self-help for depression cause harm? An individual participant data meta-analysis on deterioration rates and its moderators in randomized controlled trials. Psychological Medicine, 46(13), 2679–2693. https://doi.org/10.1017/s0033291716001562

Altermatt, Florian, & Ebert, Dieter. (2016). Reduced flight-to-light behaviour of moth populations exposed to long-term urban light pollution. Biology Letters, 12(4), 20160111. https://doi.org/10.1098/rsbl.2016.0111

Arbore, R., Andras, J. P., Routtu, J., & Ebert, Dieter. (2016). Ecological genetics of sediment browsing behaviour in a planktonic crustacean. Journal of Evolutionary Biology, 29(10), 1999–2009. https://doi.org/10.1111/jeb.12923

Dukić, Marinela, Berner, Daniel, Roesti, Marius, Haag, Christoph R., & Ebert, Dieter. (2016). A high-density genetic map reveals variation in recombination rate across the genome of Daphnia magna. BMC genetics, 17(1), 137. https://doi.org/10.1186/s12863-016-0445-7

Duneau, David, Ebert, Dieter, & Du Pasquier, Louis. (2016). Infections by Pasteuria do not protect its natural host Daphnia magna from subsequent infections. Developmental and Comparative Immunology, 57, 5–120. https://doi.org/10.1016/j.dci.2015.12.004

Ebert, Dieter, Duneau, David, Hall, Matthew D., Luijckx, Pepijn, Andras, Jason P., Du Pasquier, Louis, & Ben-Ami, Frida. (2016). A Population Biology Perspective on the Stepwise Infection Process of the Bacterial Pathogen Pasteuria ramosa in Daphnia. Advances in Parasitology, 91, 265–+. https://doi.org/10.1016/bs.apar.2015.10.001

Metzger, César M. J. A., Luijckx, Pepijn, Bento, Gilberto, Mariadassou, Mahendra, & Ebert, Dieter. (2016). The Red Queen lives: Epistasis between linked resistance loci. Evolution, 70(2), 480–487. https://doi.org/10.1111/evo.12854

Michel, Jessica, Ebert, Dieter, & Hall, Matthew D. (2016). The trans-generational impact of population density signals on host-parasite interactions. BMC Evolutionary Biology, 16(1), 254. https://doi.org/10.1186/s12862-016-0828-4

Mushegian, Alexandra A., Burcklen, Elodie, Schär, Tobias M. M., & Ebert, Dieter. (2016). Temperature-dependent benefits of bacterial exposure in embryonic development of Daphnia magna resting eggs. Journal of Experimental Biology, 219(Pt 6), 897–904. https://doi.org/10.1242/jeb.134759

Mushegian, Alexandra A, & Ebert, Dieter. (2016). Rethinking “mutualism” in diverse host-symbiont communities. Bioessays, 38(1), 8–100. https://doi.org/10.1002/bies.201500074

Orsini, Luisa, Gilbert, Donald, Podicheti, Ram, Jansen, Mieke, Brown, James B., Solari, Omid Shams, Spanier, Katina I., Colbourne, John K., Rush, Douglas, Decaestecker, Ellen, Asselman, Jana, De Schamphelaere, Karel A. C., Ebert, Dieter, Haag, Christoph R., Kvist, Jouni, Laforsch, Christian, Petrusek, Adam, Beckerman, Andrew P., Little, Tom J., et al. (2016). Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors. Scientific Data, 4, 160030. https://doi.org/10.1038/sdata.2016.30

Rabajante, Jomar F., Tubay, Jerrold M., Ito, Hiromu, Uehara, Takashi, Kakishima, Satoshi, Morita, Satoru, Yoshimura, Jin, & Ebert, Dieter. (2016). Host-parasite Red Queen dynamics with phase-locked rare genotypes. Science Advances, 2(3), e1501548. https://doi.org/10.1126/sciadv.1501548