Blattner, Lucas A., Kulanek, Dustin, Ruffener, Simona, Ziegler, Heiner, Wymann, Hans-Peter, Wiemers, Martin, Michalik, Peter, & Berner, Daniel. (2024). Urbanization-associated range expansion genetically homogenizes a butterfly species [Journal-article]. Current Biology, 34(19), 4589–4595. https://doi.org/10.1016/j.cub.2024.09.006

Ruffener, Simona C., Matthey-de-l’Endroit, Nathalie, & Berner, Daniel. (2024). Invasion of Pieris mannii butterflies across Central Europe facilitated by urbanization. Urban Ecosystems, 27(4), 1155–1165. https://doi.org/10.1007/s11252-024-01507-3

Berner, Daniel, Ruffener, Simona, & Blattner, Lucas A. (2023). Chromosome-Level Assemblies of the Pieris mannii Butterfly Genome Suggest Z-Origin and Rapid Evolution of the W Chromosome. Genome Biology and Evolution, 15(6), evad111. https://doi.org/10.1093/gbe/evad111

Laurentino, Telma G., Boileau, Nicolas, Ronco, Fabrizia, & Berner, Daniel. (2022). The ectodysplasin-A receptor is a candidate gene for lateral plate number variation in stickleback fish [Journal-article]. G3-Genes Genomes Genetics, 6(12). https://doi.org/10.1093/g3journal/jkac077

Berner, Daniel, & Amrhein, Valentin. (2022). Why and how we should join the shift from significance testing to estimation. Journal of Evolutionary Biology, 35(6), 777–787. https://doi.org/10.1111/jeb.14009

Blattner, Lucas, Lucek, Kay, Beck, Nathanael, Berner, Daniel, & von Fumetti, Stefanie. (2022). Intra-Alpine Islands: Population genomic inference reveals high degree of isolation between freshwater spring habitats. Diversity and Distributions, 28(2), 291–305. https://doi.org/10.1111/ddi.13461

Berner, Daniel. (2021). Re-evaluating the evidence for facilitation of stickleback speciation by admixture in the Lake Constance basin. Nature Communications, 12(1), 2806. https://doi.org/10.1038/s41467-021-23092-1

Haenel, Quiterie, Guerard, Laurent, MacColl, Andrew D. C., & Berner, Daniel. (2021). The maintenance of standing genetic variation: Gene flow vs. selective neutrality in Atlantic stickleback fish. Molecular ecology, 31(3), 811–821. https://doi.org/10.1111/mec.16269

Haenel, Quiterie, Oke, Krista B., Laurentino, Telma G., Hendry, Andrew P., & Berner, Daniel. (2021). Clinal genomic analysis reveals strong reproductive isolation across a steep habitat transition in stickleback fish. Nature Communications, 12(1), 4850. https://doi.org/10.1038/s41467-021-25039-y

Bissegger, Mirjam, Laurentino, Telma G., Roesti, Marius, & Berner, Daniel. (2020). Widespread intersex differentiation across the stickleback genome - The signature of sexually antagonistic selection? MOLECULAR ECOLOGY, 29(2), 262–271. https://doi.org/10.1111/mec.15255

Laurentino, Telma G., Moser, Dario, Roesti, Marius, Ammann, Matthias, Frey, Anja, Ronco, Fabrizia, Kueng, Benjamin, & Berner, Daniel. (2020). Genomic release-recapture experiment in the wild reveals within-generation polygenic selection in stickleback fish. Nature Communications, 11(1), 1928. https://doi.org/10.1038/s41467-020-15657-3

Berner, Daniel. (2019). Allele Frequency Difference AFD-An Intuitive Alternative to F-ST for Quantifying Genetic Population Differentiation. Genes, 10(4), 308. https://doi.org/10.3390/genes10040308

Berner, Daniel, Roesti, Marius, Bilobram, Steven, Chan, Simon K., Kirk, Heather, Pandoh, Pawan, Taylor, Gregory A., Zhao, Yongjun, Jones, Steven J. M., & DeFaveri, Jacquelin. (2019). De Novo Sequencing, Assembly, and Annotation of Four Threespine Stickleback Genomes Based on Microfluidic Partitioned DNA Libraries. Genes, 10(6), 426. https://doi.org/10.3390/genes10060426

Dukić, Marinela, Berner, Daniel, Haag, Christoph R., & Ebert, Dieter. (2019). How clonal are clones? A quest for loss of heterozygosity during asexual reproduction in Daphnia magna. Journal of Evolutionary Biology, 32(6), 619–628. https://doi.org/10.1111/jeb.13443

Haenel, Quiterie, Roesti, Marius, Moser, Dario, MacColl, Andrew D. C., & Berner, Daniel. (2019). Predictable genome-wide sorting of standing genetic variation during parallel adaptation to basic versus acidic environments in stickleback fish. Evolution Letters, 3(1), 28–42. https://doi.org/10.1002/evl3.99

Haenel, Quiterie, Laurentino, Telma G., Roesti, Marius, & Berner, Daniel. (2018). Meta-analysis of chromosome-scale crossover rate variation in eukaryotes and its significance to evolutionary genomics. Molecular Ecology, 27(11), 2477–2497. https://doi.org/10.1111/mec.14699

Berner, Daniel, Ammann, Matthias, Spencer, Eleanor, Rüegg, Attila, Lüscher, Daniel, & Moser, Dario. (2017). Sexual isolation promotes divergence between parapatric lake and stream stickleback. Journal of Evolutionary Biology, 30(2), 401–411. https://doi.org/10.1111/jeb.13016

Berner, Daniel, & Roesti, Marius. (2017). Genomics of adaptive divergence with chromosome-scale heterogeneity in crossover rate. Molecular Ecology, 26(22), 6351–6369. https://doi.org/10.1111/mec.14373

Lohman, Brian, Berner, Daniel, & Bolnick, Daniel. (2017). Clines arc through multivariate morphospace. The American Naturalist, 189(4), 354–367. https://doi.org/10.1086/690808

Dukić, Marinela, Berner, Daniel, Roesti, Marius, Haag, Christoph R., & Ebert, Dieter. (2016). A high-density genetic map reveals variation in recombination rate across the genome of Daphnia magna. BMC genetics, 17(1), 137. https://doi.org/10.1186/s12863-016-0445-7

Moser, D., Frey, A., & Berner, D. (2016). Fitness differences between parapatric lake and stream stickleback revealed by a field transplant. Journal of Evolutionary Biology, 29(4), 711–719. https://doi.org/10.1111/jeb.12817

Berner, Daniel, & Salzburger, Walter. (2015). The genomics of organismal diversification illuminated by adaptive radiations. Trends in Genetics, 31(9), 491–499. https://doi.org/10.1016/j.tig.2015.07.002

Berner, Daniel, & Thibert-Plante, X. (2015). How mechanisms of habitat preference evolve and promote divergence with gene flow. Journal of Evolutionary Biology, 28(9), 1641–1655. https://doi.org/10.1111/jeb.12683

Moser, D., Kueng, B., & Berner, D. (2015). Lake-stream divergence in stickleback life history: a plastic response to trophic niche differentiation? Evolutionary Biology, 42(3), 328–338. https://doi.org/10.1007/s11692-015-9327-6

Roesti, M., Kueng, B., Moser, D., & Berner, D. (2015). The genomics of ecological vicariance in threespine stickleback fish. Nature Communications, 6, 10229. https://doi.org/10.1038/ncomms9767

Berner, Daniel, Moser, Dario, Roesti, Marius, Buescher, Heinz, & Salzburger, Walter. (2014). Genetic architecture of skeletal evolution in European lake and stream stickleback. Evolution: International Journal of Organic Evolution, 68(6), 1792–1805. https://doi.org/10.1111/evo.12390

Roesti, Marius, Gavrilets, Sergey, Hendry, Andrew P., Salzburger, Walter, & Berner, Daniel. (2014). The genomic signature of parallel adaptation from shared genetic variation. Molecular Ecology, 23(16), 3944–3956. https://doi.org/10.1111/mec.12720

Roesti, Marius, Moser, Dario, & Berner, Daniel. (2013). Recombination in the threespine stickleback genome - patterns and consequences. Molecular Ecology, 22(11), 3014–3027. https://doi.org/10.1111/mec.12322

Berner, Daniel. (2012). How much can the orientation of G’s eigenvectors tell us about genetic constraints? Ecology and Evolution, 2(8), 1834–1842. https://doi.org/10.1002/ece3.306

Moser, Dario, Roesti, Marius, & Berner, Daniel. (2012). Repeated Lake-Stream Divergence in Stickleback Life History within a Central European Lake Basin. PLoS ONE, 7(12), e50620. https://doi.org/10.1371/journal.pone.0050620

Roesti, Marius, Hendry, Andrew P., Salzburger, Walter, & Berner, Daniel. (2012). Genome divergence during evolutionary diversification as revealed in replicate lake-stream stickleback population pairs. Molecular Ecology, 21(12), 2852–2862. https://doi.org/10.1111/j.1365-294x.2012.05509.x

Roesti, Marius, Salzburger, Walter, & Berner, Daniel. (2012). Uninformative polymorphisms bias genome scans for signatures of selection. BMC Evolutionary Biology, 12, 94. https://doi.org/10.1186/1471-2148-12-94

Berner, Daniel. (2011). Size correction in biology: how reliable are approaches based on (common) principal component analysis? Oecologia, 166(4), 961–971. https://doi.org/10.1007/s00442-011-1934-z

Berner, D, Kaeuffer, R, Grandchamp, A-C, Raeymaekers, J A M, Räsänen, K, & Hendry, A P. (2011). Quantitative genetic inheritance of morphological divergence in a lake-stream stickleback ecotype pair: implications for reproductive isolation. Journal of Evolutionary Biology, 24(9), 1975–1983. https://doi.org/10.1111/j.1420-9101.2011.02330.x

Berner, Daniel, Roesti, Marius, Hendry, Andrew P., & Salzburger, Walter. (2010). Constrain on speciation suggested by comparing lake-stream stickleback divergence across two continents. Molecular Ecology, 19(22), 4963–4978. https://doi.org/10.1111/j.1365-294x.2010.04858.x

Berner, Daniel, Stutz, William E, & Bolnick, Daniel I. (2010). Foraging trait (co)variances in stickleback evolve deterministically and do not predict trajectories of adaptive diversification. Evolution, 64(8), 2265–2277. https://doi.org/10.1111/j.1558-5646.2010.00982.x

Crispo, Erika, DiBattista, Joseph, Correa, Cristian, Thibert-Plante, Xavier, McKellar, Ann, Schwartz, Amy, Berner, Daniel, De Leon, Luis, & Hendry, Andrew. (2010). The evolution of phenotypic plasticity in response to anthropogenic disturbance. Evolutionary Ecology Research, 12(1), 47–66. https://www.evolutionary-ecology.com/

Raeymaekers, J A M, Boisjoly, M, Delaire, L, Berner, D, Räsänen, K, & Hendry, A P. (2010). Testing for mating isolation between ecotypes: laboratory experiments with lake, stream and hybrid stickleback. Journal of Evolutionary Biology, 23(12), 2694–2708. https://doi.org/10.1111/j.1420-9101.2010.02133.x

Berner, D. (2009). Correction of a bootstrap approach to testing for evolution along lines of least resistance. Journal of Evolutionary Biology, 22(12), 2563–2565. https://doi.org/10.1111/j.1420-9101.2009.01869.x

Berner, Daniel, Grandchamp, Anne-Catherine, & Hendry, Andrew P. (2009). Variable progress toward ecological speciation in parapatry : stickleback across eight lake-stream transitions. Evolution, 63(7), 1740–1753. https://doi.org/10.1111/j.1558-5646.2009.00665.x

Hendry, A P, Bolnick, D I, Berner, D, & Peichel, C L. (2009). Along the speciation continuum in sticklebacks. Journal of Fish Biology, 75(8), 2000–2036. https://doi.org/10.1111/j.1095-8649.2009.02419.x

Sharpe, Diana, Räsänen, Katja, Berner, Daniel, & Hendry, Andrew. (2008). Genetic and environmental contributions to the morphology of lake and stream stickleback: implications for gene flow and reproductive isolation. Evolutionary Ecology Research, 10, 849–866.

BERNER, D., & BLANCKENHORN, W. U. (2007). An ontogenetic perspective on the relationship between age and size at maturity [Journal-article]. Functional Ecology, 21(3), 505–512. https://doi.org/10.1111/j.1365-2435.2007.01253.x

Berner, Daniel, & Blanckenhorn, Wolf U. (2006). Grasshopper ontogeny in relation to time constraints : adaptive divergence and stasis. The Journal of Animal Ecology, 75(1), 130–139. https://doi.org/10.1111/j.1365-2656.2005.01028.x

Berner, D, Blanckenhorn, WU, & Korner, C. (2005). Grasshoppers cope with low host plant quality by compensatory feeding and food selection : N limitation challenged. Oikos, 111(3), 525–533. https://doi.org/10.1111/j.1600-0706.2005.14144.x

Berner, D, Korner, C, & Blanckenhorn, WU. (2004). Grasshopper populations across 2000 m of altitude : is there life history adaptation? Ecography, 27(6), 733–740. https://doi.org/10.1111/j.0906-7590.2005.04012.x