Prof. Dr. med. Daniel Henry Paris

Rwibasira, G. N., Kwizera, J. C., Dzinamarira, T., Karera, S., Gaetan, G., Tuyishime, A., Remera, E., Paris, D. H., & Glass, T. R. (2026). Virological Failure and Mortality Among People Living with HIV Transitioned to Second- or Third-Line Antiretroviral Therapy in Rwanda: A Competing-Risks Survival Analysis of National Case-Based Surveillance Data, 2019–2025 [Journal-article]. Viruses, 18(8), 905. https://doi.org/10.3390/v18080905

Glanzmann, Sara, Luoga, Ezekiel, Okuma, James, Dotto, Elizabeth, Sigalla, George, Franzeck, Fabian C., Nyenza, Emanuel, Mnzava, Dorcas, Bukuku, Mathias, Moshi, Lilian, Wilson, Lulu, Paris, Daniel H., Glass, Tracy R., Mollel, Getrud J., Weisser, Maja, Vanobberghen, Fiona, & on behalf of the KIULARCO Study Group. (2026). The impact of dolutegravir on the growth of HIV-exposed uninfected infants: an observational cohort study in rural Tanzania. eClinicalMedicine, 96. https://doi.org/10.1016/j.eclinm.2026.103984

Ntamatungiro, Alex J., Francis, Joel M., Mnzava, Dorcas, Ndege, Robert, Njau, Prosper S., Okuma, James, Vanobberghen, Fiona, Paris, Daniel H., kagura, Juliana, & Weisser, Maja. (2026). Recent HIV-1 infection and pre-treatment HIV drug resistance among adults initiating antiretroviral therapy in rural Tanzania. International Journal of STD and AIDS, 37. https://doi.org/10.1177/09564624251409692

Ndege, Robert, Bani, Farida, Ngome, Omary, Sasamalo, Mohamed, Mnzava, Dorcas, Vanobberghen, Fiona, Paris, Daniel, Weisser, Maja, & Rohacek, Martin. (2026). Diagnostic Accuracy of Sonographic Signs of Extrapulmonary Tuberculosis and Treatment Response Monitoring in HIV-Positive and -Negative Populations [Journal-article]. The Ultrasound Journal, 18(1), 18222. https://doi.org/10.5826/tuj.2026.18222

Rwibasira, Gallican N., Kwizera, Jean Claude, Karera, Steven, Dzinamarira, Tafadzwa, Holmes, Charles, Ahmed, Ayman, Tuyishime, Albert, Remera, Eric, Paris, Daniel Henry, & Glass, Tracy R. (2026). Factors Associated With Viral Load Suppression Among Adolescents and Young Adults Living With HIV on ART in Rwanda: Data From Rwanda HIV Case‐Based Surveillance, 2019–2025 [Journal-article]. Journal of Tropical Medicine, 2026(1). https://doi.org/10.1155/jotm/5304043

Weisser, Maja, Mapesi, Herry, Vanobberghen, Fiona, Okuma, James, Eichenberger, Anna, Wilson, Herieth Ismael, Paris, Daniel Henry, Kalinjuma, Aneth V., Luoga, Ezekiel, Wilson, Lulu, Glass, Tracy Renée, Franzeck, Fabian Christoph, Asantiel, Aschola, Bani, Farida, Battegay, Manuel, Byakuzana, Theonestina, Claud, Joyce, Chale, Adolphina, Dotto, Elizabeth, et al. (2025). Body weight changes in people with HIV starting dolutegravir versus efavirenz-based regimens in a large cohort in rural Tanzania. AIDS, 39(4), 362–372. https://doi.org/10.1097/qad.0000000000004085

Southisavath, Phonesavanh, Kling, Kerstin, Homsana, Anousin, Probst-Hensch, Nicole, Paris, Daniel Henry, Sayasone, Somphou, & Odermatt, Peter. (2025). Elimination of schistosomiasis mekongi in reach for Lao PDR: The last patient with severe disease? Parasitology International, 104. https://doi.org/10.1016/j.parint.2024.102976

Tshokey, Tshokey, Ko, Ablert I., Currie, Bart J., Munoz-Zanzi, Claudia, Goarant, Cyrille, Paris, Daniel H., Dance, David A B, Limmathurotsakul, Direk, Birnie, Emma, Bertherat, Eric, Gongal, Gyanendra, Benschop, Jackie, Savelkoel, Jelmer, Stenos, John, Saraswati, Kartika, Robinson, Matthew T., Day, Nicholas P J, Graves, Stephen R., Belmain, Steven R., et al. (2025). Leptospirosis, melioidosis, and rickettsioses in the vicious circle of neglect. PLoS Neglected Tropical Diseases, 19(1), e0012796. https://doi.org/10.1371/journal.pntd.0012796

Asantiel, Aschola, Bani, Farida, Battegay, Manuel, Byakuzana, Theonestina, Claud, Joyce, Chale, Adolphina, Dotto, Elizabeth, Francis, Gideon, Glass, Tracy, Haridas, Yvonne, Hwaya, Speciosa, Kalinjuma, Aneth V., Katende, Andrew, Kisunga, Yassin, Kivuma, Bernard, Luoga, Ezekiel, Lwali, Jerome, Martin, Edgar Enzigard, Masoud, Swalehe, et al. (2024). Viral suppression and adherence in adolescents living with HIV in rural Tanzania. PLOS ONE, 19(12 December). https://doi.org/10.1371/journal.pone.0315866

Katende, Andrew, Roos, Laurine, Urio, Victor Z., Mahundi, Evance, Myovela, Victor, Mnzava, Dorcas, Mlula, Chipegwa, Chitimbwa, Christamonica, Raphael, Dominick M., Gingo, Winfrid, Franzeck, Fabian C., Paris, Daniel H., Elzi, Luigia, Weisser, Maja, & Rohacek, Martin. (2024). Recovery of left ventricular systolic function in peripartum cardiomyopathy: an observational study from rural Tanzania. BMC Cardiovascular Disorders, 24(1). https://doi.org/10.1186/s12872-024-03906-y

Homsana, Anousin, Southisavath, Phonesavanh, Kling, Kerstin, Hattendorf, Jan, Vorasane, Savina, Paris, Daniel Henry, Probst-Hensch, Nicole, Sayasone, Somphou, & Odermatt, Peter. (2024). Burden and risk factors of suspected cholangiocarcinoma in high Opisthorchis viverrini endemic rural communities in southern Lao PDR. PLOS Neglected Tropical Diseases, 18(11). https://doi.org/10.1371/journal.pntd.0012617

Nooh, F., Ismail, M., Chernet, A., Paris, D., Utzinger, J., & Probst-Hensch, N. (2024). Awareness, treatment and control of hypertension in Hargeisa, Somaliland [Posted-content]. Springer Science and Business Media LLC. https://doi.org/10.21203/rs.3.rs-4978124/v1

Oakley, Regina, Kann, Simone, Concha, Gustavo, Plag, Michèle, Poppert, Sven, Graves, Stephen, Paris, Daniel H., & Dreyfus, Anou. (2024). Seroprevalence of Rickettsia Spp. and Orientia tsutsugamushi in Indigenous Populations from the Sierra Nevada de Santa Marta, Colombia. Vector-Borne and Zoonotic Diseases, 24(10), 641–648. https://doi.org/10.1089/vbz.2023.0077

Aiemjoy, Kristen, Katuwal, Nishan, Vaidya, Krista, Shrestha, Sony, Thapa, Melina, Teunis, Peter, Bogoch, Isaac I., Trowbridge, Paul, Blacksell, Stuart D., Paris, Daniel H., Wangrangsimakul, Tri, Varghese, George M., Maude, Richard J., Tamrakar, Dipesh, & Andrews, Jason R. (2024). Estimating the Seroincidence of Scrub Typhus using Antibody Dynamics after Infection. American Journal of Tropical Medicine and Hygiene, 111(2), 267–276. https://doi.org/10.4269/ajtmh.23-0475

Chernet, Afona, Paris, Daniel H., Alchalabi, Lujain, Utzinger, Jürg, & Reus, Elisabeth. (2024). Public and Patient Involvement in Migration Health Research: Eritrean and Syrian Refugees’ and Asylum Seekers’ Views in Switzerland. Healthcare (Switzerland), 12(16). https://doi.org/10.3390/healthcare12161654

Oakley, Regina Bina, Gemechu, Gizachew, Gebregiorgis, Ashenafi, Alemu, Ayinalem, Zinsstag, Jakob, Paris, Daniel Henry, & Tschopp, Rea. (2024). Seroprevalence and risk factors for Q fever and Rift Valley fever in pastoralists and their livestock in Afar, Ethiopia: A One Health approach [Journal-article]. PLoS Neglected Tropical Diseases, 18(5), e0012392. https://doi.org/10.1371/journal.pntd.0012392

Ndege, Robert, Rohacek, Martin, Bani, Farida, Ngome, Omary, Okuma, James, Sasamalo, Mohamed, Mnzava, Dorcas, Reither, Klaus, Vanobberghen, Fiona, Hella, Jerry, Paris, Daniel H., & Weisser, Maja. (2024). Diagnostic Yield of Urine Xpert MTB/ RIF Ultra in Adults With Suspected Extrapulmonary Tuberculosis. Open Forum Infectious Diseases, 11(7). https://doi.org/10.1093/ofid/ofae338

Chernet, Afona, Paris, Daniel H., Alchalabi, Lujain, Utzinger, Jürg, & Reus, Elisabeth. (2024). Public and Patient Involvement in Migration Health Research: Eritrea and Syria Refugees’ and Asylum Seekers’ Views in Switzerland [Posted-content]. In Preprints.org. MDPI AG. https://doi.org/10.20944/preprints202406.2003.v1

Oakley, Regina, Hedrich, Nadja, Walker, Alexandra, Dinkita, Habtamu Merha, Tschopp, Rea, Abongomera, Charles, & Paris, Daniel H. (2024). Status of zoonotic disease research in refugees, asylum seekers and internally displaced people, globally: A scoping review of forty clinically important zoonotic pathogens [Journal-article]. PLoS Neglected Tropical Diseases, 18(5), e0012164. https://doi.org/10.1371/journal.pntd.0012164

Zepro, Nejimu Biza, Medhanyie, Araya Abrha, Probst-Hensch, Nicole, Chernet, Afona, Tschopp, Rea, Abongomera, Charles, Paris, Daniel H., & Merten, Sonja. (2024). Navigating challenges: a socioecological analysis of sexual and reproductive health barriers among Eritrean refugee women in Ethiopia, using a key informant approach. BMJ Open, 14(4). https://doi.org/10.1136/bmjopen-2023-080654

König, Rahel Susanne, Paris, Daniel Henry, Sollberger, Marc, & Tschopp, Rea. (2024). Identifying the mental health burden in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS) patients in Switzerland: A pilot study. Heliyon, 10(5). https://doi.org/10.1016/j.heliyon.2024.e27031

Katende, Andrew, Oehri, Johanna, Urio, Victor Z., Mahundi, Evance, Wilson, Lulu, Myovela, Victor, Mlula, Chipegwa, Chitimbwa, Christamonica, Mbawala, Caspar, Faustine, Fanuel, Mteki, Valentine, Gingo, Winfrid, Kitila, Faraja, Mwasongwe, Ipyana, Bucher, Claudia, Elzi, Luigia, Okuma, James, Zoller, Thomas, Paris, Daniel H., et al. (2024). Use of a Handheld Ultrasonographic Device to Identify Heart Failure and Pulmonary Disease in Rural Africa. JAMA Network Open, 7(2), E240577. https://doi.org/10.1001/jamanetworkopen.2024.0577

Brummaier, Tobias, Rinchai, Darawan, Toufiq, Mohammed, Karim, Mohammed Y., Habib, Tanwir, Utzinger, Jürg, Paris, Daniel H., McGready, Rose, Marr, Alexandra K., Kino, Tomoshige, Terranegra, Annalisa, Al Khodor, Souhaila, Chaussabel, Damien, & Syed Ahamed Kabeer, Basirudeen. (2024). Design of a targeted blood transcriptional panel for monitoring immunological changes accompanying pregnancy. Frontiers in Immunology, 15. https://doi.org/10.3389/fimmu.2024.1319949

Erhardt, Rahel M., Jafflin, Kristen, Zepro, Nejimu, Abongomera, Charles, Chernet, Afona, Paris, Daniel Henry, & Merten, Sonja. (2024). Obstetric Outcomes of Eritrean Immigrants in Switzerland: A Comparative Study. International Journal of Public Health, 69. https://doi.org/10.3389/ijph.2024.1606745

Homsana, Anousin, Southisavath, Phonesavanh, Kling, Kerstin, Hattendorf, Jan, Vorasane, Savina, Paris, Daniel Henry, Sayasone, Somphou, Odermatt, Peter, & Probst-Hensch, Nicole. (2024). Steatotic liver disease among lean and non-lean individuals in Southern Lao PDR: a cross-sectional study of risk factors. Annals of Medicine, 56(1). https://doi.org/10.1080/07853890.2024.2329133

Oakley, Regina, Dreyfus, Anou, Concha, Gustavo, Poppert, Sven, Plag, Michèle, Meile, Celine, Graves, Stephen, Paris, Daniel H., & Kann, Simone. (2024). Seroprevalence of Coxiella burnetii in an Indigenous Population from the Sierra Nevada De Santa Marta, Colombia. American Journal of Tropical Medicine and Hygiene, 110(1), 155–158. https://doi.org/10.4269/ajtmh.23-0252

Paris, Daniel H., & White, Nicholas J. (2024). SOUTH-EAST ASIA. In Routledge Handbook of Infectious Diseases: A Geographical Guide, Third Edition (pp. 196–212). Taylor and Francis. https://doi.org/10.4324/9781003531425-16

Tamborrini, Marco, Schäfer, Anja, Hauser, Julia, Zou, Linghui, Paris, Daniel H., & Pluschke, Gerd. (2023). The malaria blood stage antigen PfCyRPA formulated with the TLR-4 agonist adjuvant GLA-SE elicits parasite growth inhibitory antibodies in experimental animals. Malaria Journal, 22(1). https://doi.org/10.1186/s12936-023-04638-8

Tancredi, Stefano, Chiolero, Arnaud, Wagner, Cornelia, Haller, Moa Lina, Chocano-Bedoya, Patricia Orializ, Ortega, Natalia, Rodondi, Nicolas, Kaufmann, Laurent, Lorthe, Elsa, Baysson, Hélène, Stringhini, Silvia, Michel, Gisela, Lüdi, Chantal, Harju, Erika, Frank, Irène, Imboden, Medea, Witzig, Melissa, Keidel, Dirk, Probst-Hensch, Nicole, et al. (2023). Seroprevalence trends of anti-SARS-CoV-2 antibodies and associated risk factors: a population-based study. Infection, 51(5), 1453–1465. https://doi.org/10.1007/s15010-023-02011-0

Inthawong, M., Pinthong, N., Thaiprakhong, A., Wangrangsimakul, T., Sunyakumthorn, P., Hill, J., Sonthayanon, P., Paris, D. H., Dunachie, S. J., & Kronsteiner, B. (2023). A whole blood intracellular cytokine assay optimised for field site studies demonstrates polyfunctionality of CD4+ T cells in acute scrub typhus. PLoS Negl Trop Dis, 17(3), e0010905. https://doi.org/10.1371/journal.pntd.0010905

Kalinjuma, A. V., Hussey, H., Mollel, G. J., Letang, E., Battegay, M., Glass, T. R., Paris, D., Vanobberghen, F., Weisser, M., & Kiularco study group. (2023). Body mass index trends and its impact of under and overweight on outcome among PLHIV on antiretroviral treatment in rural Tanzania: a prospective cohort study. PLoS One, 18(8), e0290445. https://doi.org/10.1371/journal.pone.0290445

Ndege, R., Ngome, O., Vanobberghen, F., Bani, F., Temba, Y., Wilson, H., Hella, J., Gingo, W., Sasamalo, M., Mnzava, D., Kimera, N., Hiza, H., Wigayi, J., Mapesi, H., Kato, I. B., Mhimbira, F., Reither, K., Battegay, M., Paris, D. H., et al. (2023). Ultrasononography in managing extrapulmonary tuberculosis: a randomized, controlled, parallel, superiority, open-label trial. Clin Infect Dis, 76(6), 1013–1021. https://doi.org/10.1093/cid/ciac871

Nooh, F., Chernet, A., Reither, K., Okuma, J., Brattig, N. W., Utzinger, J., Probst-Hensch, N., Paris, D. H., & Dreyfus, A. (2023). Prevalence of fever of unidentified aetiology in East African adolescents and adults: a systematic review and meta-analysis. Infect Dis Poverty, 12(1), 55. https://doi.org/10.1186/s40249-023-01105-z

Nooh, F., Utzinger, J., Paris, D. H., Probst-Hensch, N., & Chernet, A. (2023). Association of hypertension, diabetes, and cardiovascular disease with COVID-19 in Africa: scoping review protocol. Trop Med Infect Dis, 8, 293. https://doi.org/10.3390/tropicalmed8060293

Oehri, J., Chernet, A., Merten, S., Sydow, V., & Paris, D. H. (2023). Improving primary healthcare access for asylum seekers and refugees: a qualitative study from a swiss family physician perspective. J Prim Care Community Health, 14, 21501319231181878. https://doi.org/10.1177/21501319231181878

Paris, D. H., & Day, N. P. J. (2023). Tropical Rickettsial Infections. In Manson’s Tropical Diseases, Fourth Edition (pp. 326–343). Elsevier. https://doi.org/10.1016/b978-0-7020-7959-7.00029-4

Tschopp, R., König, R. S., Rejmer, P., & Paris, D. H. (2023). Health system support among patients with ME/CFS in Switzerland. J Taibah Univ Med Sci, 18(4), 876–885. https://doi.org/10.1016/j.jtumed.2022.12.019

Tschopp, R., König, R. S., Rejmer, P., & Paris, D. H. (2023). Myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS): a preliminary survey among patients in Switzerland. Heliyon, 9(5), e15595. https://doi.org/10.1016/j.heliyon.2023.e15595

Zepro, N. B., Ali, N. T., Tarr, N., Medhanyie, A. A., Paris, D. H., Probst-Hensch, N., & Merten, S. (2023). Sexual and reproductive health services use among adolescents in pastoralist settings, northeastern Ethiopia. BMC Health Serv Res, 23(1), 677. https://doi.org/10.1186/s12913-023-09616-z

Inthawong, M., Pinthong, N., Thaiprakhong, A., Wangrangsimakul, T., Sunyakumthorn, P., Hill, J., Sonthayanon, P., Paris, D. H., Dunachie, S., & Kronsteiner, B. (2022). A whole blood intracellular cytokine assay optimised for field site studies demonstrates polyfunctionality of CD4+ T cells in acute scrub typhus [Posted-content]. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2022.10.28.513456

Bauer, M., Kitila, F., Mwasongwe, I., Abdallah, I. S., Siongo, E., Kasunga, S., Gingo, W., Ndege, R., Hasler, K., Paris, D. H., Weisser Rohacek, M., & Rohacek, M. (2022). Ultrasonographic findings in patients with abdominal symptoms or trauma presenting to an emergency room in rural Tanzania. PLoS One, 17(6), e0269344. https://doi.org/10.1371/journal.pone.0269344

Dreyfus, A., Ruf, M. T., Goris, M., Poppert, S., Mayer-Scholl, A., Loosli, N., Bier, N. S., Paris, D. H., Tshokey, T., Stenos, J., Rajaonarimirana, E., Concha, G., Orozco, J., Colorado, J., Aristizábal, A., Dib, J. C., & Kann, S. (2022). Comparison of the serion IgM ELISA and Microscopic Agglutination Test for diagnosis of Leptospira spp. infections in sera from different geographical origins and estimation of s seroprevalence in the Wiwa indigenous population from Colombia. PLoS Negl Trop Dis, 16(6), e0009876. https://doi.org/10.1371/journal.pntd.0009876

Elliott, I., Kumlert, R., Thangnimitchok, N., Blacksell, S. D., Tanganuchitcharnchai, A., Paris, D. H., Newton, P. N., & Morand, S. (2022). Orientia tsutsugamushi in chiggers and small mammals in Laos. Vector Borne Zoonotic Dis, 22(10), 505–511. https://doi.org/10.1089/vbz.2022.0029

Hoermann, J., Kuenzli, E., Schaefer, C., Paris, D. H., Bühler, S., Odermatt, P., Sayasone, S., Neumayr, A., & Nickel, B. (2022). Performance of a rapid immuno-chromatographic test (Schistosoma ICT IgG-IgM) for detecting Schistosoma-specific antibodies in sera of endemic and non-endemic populations. PLoS Negl Trop Dis, 16(5), e0010463. https://doi.org/10.1371/journal.pntd.0010463

Inthawong, M., Sunyakumthorn, P., Wongwairot, S., Anantatat, T., Dunachie, S. J., Im-Erbsin, R., Jones, J. W., Mason, C. J., Lugo, L. A., Blacksell, S. D., Day, N. P. J., Sonthayanon, P., Richards, A. L., & Paris, D. H. (2022). A time-course comparative clinical and immune response evaluation study between the human pathogenic Orientia tsutsugamushi strains: Karp and Gilliam in a rhesus macaque (Macaca mulatta) model. PLoS Negl Trop Dis, 16(8), e0010611. https://doi.org/10.1371/journal.pntd.0010611

Mollel, G. J., Moshi, L., Hazem, H., Eichenberger, A., Kitau, O., Mapesi, H., Glass, T. R., Paris, D. H., Weisser, M., & Vanobberghen, F. (2022). Causes of death and associated factors over a decade of follow-up in a cohort of people living with HIV in rural Tanzania. BMC Infect Dis, 22(1), 37. https://doi.org/10.1186/s12879-021-06962-3

Ndege, R. C., Okuma, J., Kalinjuma, A. V., Mkumbo, J., Senkoro, E., Fue, G., Samson, L., Mapesi, H., Shabani, S., Glass, T. R., Battegay, M., Paris, D. H., Vanobberghen, F., Weisser, M., & Kiularco Study Group. (2022). Failure to return pillbox is a predictor of being lost to follow-up among people living with HIV on antiretroviral therapy in rural Tanzania. HIV Med, 23(6), 661–672. https://doi.org/10.1111/hiv.13223

Ndege, R., Ngome, O., Vanobberghen, F., Bani, F., Temba, Y., Wilson, H., Hella, J., Gingo, W., Sasamalo, M., Mnzava, D., Kimera, N., Hiza, H., Wigayi, J., Mapesi, H., Kato, I. B., Mhimbira, F., Reither, K., Battegay, M., Paris, D. H., et al. (2022). Ultrasound in managing extrapulmonary tuberculosis: a randomised, controlled, parallel, superiority, open-label trial. Clinical infectious diseases, 76(6), 1013–1021. https://doi.org/10.1093/cid/ciac871

Tran, H. T. D., Schindler, C., Pham, T. T. T., Vien, M. Q., Do, H. M., Ngo, Q. T., Nguyen, T. B., Hoang, H. T. H., Vu, L. T. H., Schelling, E., & Paris, D. H. (2022). Simple clinical and laboratory predictors to improve empirical treatment strategies in areas of high scrub typhus and dengue endemicity, central Vietnam. PLoS Negl Trop Dis, 16(5), e0010281. https://doi.org/10.1371/journal.pntd.0010281

Weisser, M., Rohacek, M., Ndege, R., Luoga, E., Katende, A., Mollel, G. J., Gingo, W., Vanobberghen, F., Paris, D. H., Hatz, C., Battegay, M., & On Behalf Of The Kiularco Study Group. (2022). The Chronic Diseases Clinic of Ifakara (CDCI)- establishing a model clinic for chronic care delivery in rural sub-Saharan Africa. Diseases, 10(4), 72. https://doi.org/10.3390/diseases10040072

Yuhana, M. Y., Hanboonkunupakarn, B., Tanganuchitcharnchai, A., Sujariyakul, P., Sonthayanon, P., Chotivanich, K., Pukrittayakamee, S., Blacksell, S. D., & Paris, D. H. (2022). Rickettsial infections are neglected causes of acute febrile illness in Teluk Intan, Peninsular Malaysia. Trop Med Infect Dis, 7(5), 77. https://doi.org/10.3390/tropicalmed7050077

Akello, J. O., Kamgang, R., Barbani, M. T., Suter-Riniker, F., Aebi, C., Beuret, C., Paris, D. H., Leib, S. L., & Ramette, A. (2021). Genomic analyses of human adenoviruses unravel novel recombinant genotypes associated with severe infections in pediatric patients. Sci Rep, 11(1), 24038. https://doi.org/10.1038/s41598-021-03445-y

Brummaier, T., Archasuksan, L., Watthanakulpanich, D., Paris, D. H., Utzinger, J., McGready, R., Proux, S., & Nosten, F. (2021). Improved detection of intestinal helminth infections with a formalin ethyl-acetate-based concentration technique compared to a crude formalin concentration technique. Trop Med Infect Dis, 6(2), 51. https://doi.org/10.3390/tropicalmed6020051

Brummaier, T., Tun, N. W., Min, A. M., Gilder, M. E., Archasuksan, L., Proux, S., Kiestra, D., Charunwatthana, P., Utzinger, J., Paris, D. H., Nacher, M., Simpson, J. A., Nosten, F., & McGready, R. (2021). Burden of soil-transmitted helminth infection in pregnant refugees and migrants on the Thailand-Myanmar border: results from a retrospective cohort. PLoS Negl Trop Dis, 15(3), e0009219. https://doi.org/10.1371/journal.pntd.0009219

Chernet, A., Probst-Hensch, N., Sydow, V., Paris, D. H., & Labhardt, N. D. (2021). Mental health and resilience among Eritrean refugees at arrival and one-year post-registration in Switzerland: a cohort study. BMC Res Notes, 14(1), 281. https://doi.org/10.1186/s13104-021-05695-5

Das, A. M., Chitnis, N., Burri, C., Paris, D. H., Patel, S., Spencer, S. E. F., Miaka, E. M., & Castaño, M. S. (2021). Modelling the impact of fexinidazole use on human African trypanosomiasis (HAT) transmission in the Democratic Republic of the Congo. PLoS Negl Trop Dis, 15(11), e0009992. https://doi.org/10.1371/journal.pntd.0009992

Elliott, I., Thangnimitchok, N., Chaisiri, K., Wangrangsimakul, T., Jaiboon, P., Day, N. P. J., Paris, D. H., Newton, P. N., & Morand, S. (2021). Orientia tsutsugamushi dynamics in vectors and hosts: ecology and risk factors for foci of scrub typhus transmission in northern Thailand. Parasit Vectors, 14(1), 540. https://doi.org/10.1186/s13071-021-05042-4

Elliott, I., Thangnimitchok, N., de Cesare, M., Linsuwanon, P., Paris, D. H., Day, N. P. J., Newton, P. N., Bowden, R., & Batty, E. M. (2021). Targeted capture and sequencing of Orientia tsutsugamushi genomes from chiggers and humans. Infect Genet Evol, 91, 104818. https://doi.org/10.1016/j.meegid.2021.104818

Kahlig, P., Neumayr, A., & Paris, D. H. (2021). Louse-borne relapsing fever-a systematic review and analysis of the literature: part 2-mortality, jarisch-herxheimer reaction, impact on pregnancy. PLoS Negl Trop Dis, 15(3), e0008656. https://doi.org/10.1371/journal.pntd.0008656

Kahlig, P., Paris, D. H., & Neumayr, A. (2021). Louse-borne relapsing fever-a systematic review and analysis of the literature: part 1-epidemiology and diagnostic aspects. PLoS Negl Trop Dis, 15(3), e0008564. https://doi.org/10.1371/journal.pntd.0008564

Kümmerle, A., Sikalengo, G., Vanobberghen, F., Ndege, R. C., Foe, G., Schlaeppi, C., Burri, C., Battegay, M., Paris, D. H., Glass, T. R., Weisser, M., Marzolini, C., & Kiularco Study Group. (2021). Recognition and management of clinically significant drug-drug interactions between antiretrovirals and co-medications in a cohort of people living with HIV in rural Tanzania: a prospective questionnaire-based study. J Antimicrob Chemother, 76(10), 2681–2689. https://doi.org/10.1093/jac/dkab254

Mapesi, H., Gupta, R., Wilson, H. I., Lukau, B., Amstutz, A., Lyimo, A., Muhairwe, J., Senkoro, E., Byakuzana, T., Mphunyane, M., Bresser, M., Glass, T. R., Lambiris, M., Fink, G., Gingo, W., Battegay, M., Paris, D. H., Rohacek, M., Vanobberghen, F., et al. (2021). The coArtHA trial-identifying the most effective treatment strategies to control arterial hypertension in sub-Saharan Africa: study protocol for a randomized controlled trial. Trials, 22(1), 77. https://doi.org/10.1186/s13063-021-05023-z

Mapesi, H., Okuma, J., Franzeck, F., Wilson, H. I., Senkoro, E., Byakuzana, T., Ndege, R., Vanobberghen, F., Glass, T. R., Battegay, M., Weisser, M., Paris, D. H., & Kiularco Study Group,. (2021). Prevalence, incidence and predictors of renal impairment in persons with HIV receiving protease-inhibitors in rural Tanzania. PLOS ONE, 16(12), e0261367. https://doi.org/10.1371/journal.pone.0261367

Tran, Thi Duc Hanh, Hattendorf, Jan, Do, Hung Manh, Hoang, Thanh Tien, Hoang, Hang Thi Hai, Lam, Hoa Ngoc, Huynh, Mai Kim, Vu, Lan Thi Hoang, Zinsstag, Jakob, Paris, Daniel Henry, & Schelling, Esther. (2021). Ecological and behavioural risk factors of scrub typhus in central Vietnam: a case‑control study. Infectious Diseases of Poverty, 10, 110. https://doi.org/10.1186/s40249-021-00893-6

Arpagaus, Armon, Franzeck, Fabian Christoph, Sikalengo, George, Ndege, Robert, Mnzava, Dorcas, Rohacek, Martin, Hella, Jerry, Reither, Klaus, Battegay, Manuel, Glass, Tracy Renee, Paris, Daniel Henry, Bani, Farida, Rajab, Omary Ngome, Weisser, Maja, & Kiularco Study Group,. (2020). Extrapulmonary tuberculosis in HIV-infected patients in rural Tanzania: the prospective Kilombero and Ulanga antiretroviral cohort. Plos One, 15(3), e0229875. https://doi.org/10.1371/journal.pone.0229875

Bircher, Rahel E., Ntamatungiro, Alex J., Glass, Tracy R., Mnzava, Dorcas, Nyuri, Amina, Mapesi, Herry, Paris, Daniel H., Battegay, Manuel, Klimkait, Thomas, Weisser, Maja, & Kiularco study group. (2020). High failure rates of protease inhibitor-based antiretroviral treatment in rural Tanzania - a prospective cohort study. PLoS ONE, 15(1), e0227600. https://doi.org/10.1371/journal.pone.0227600

Brown, Jennifer Anne, Ringera, Isaac, Luoga, Ezekiel, Cheleboi, Molisana, Kimera, Namvua, Muhairwe, Josephine, Kayembe, Buntshi Paulin, Molapo Hlasoa, Mosa, Kabundi, Lorraine, Yav, Ching Wey David, Mothobi, Buoang, Thahane, Lineo, Amstutz, Alain, Bachmann, Nadine, Mollel, Getrud Joseph, Bresser, Moniek, Glass, Tracy Renée, Paris, Daniel Henry, Klimkait, Thomas, et al. (2020). Genotype-Informed Versus Empiric Management Of VirEmia (GIVE MOVE): study protocol of an open-label randomised clinical trial in children and adolescents living with HIV in Lesotho and Tanzania. BMC Infectious Diseases, 20(1), 773. https://doi.org/10.1186/s12879-020-05491-9

Brummaier, Tobias, Kabeer, Basirudeen Syed Ahamed, Chaussabel, Damien, Utzinger, Jürg, McGready, Rose, & Paris, Daniel H. (2020). Blood gene transcript signature profiling in pregnancies resulting in preterm birth: a systematic review. European journal of obstetrics, gynecology and reproductive biology, 8, 100118. https://doi.org/10.1016/j.eurox.2020.100118

Brummaier, Tobias, Syed Ahamed Kabeer, Basirudeen, Wilaisrisak, Pornpimon, Pimanpanarak, Mupawjay, Win, Aye Kyi, Pukrittayakamee, Sasithon, Marr, Alexandra K., Kino, Tomoshige, Al Khodor, Souhaila, Terranegra, Annalisa, Carrara, Verena I., Nosten, Francois, Utzinger, Jürg, Chaussabel, Damien, Paris, Daniel H., & McGready, Rose. (2020). Cohort profile: molecular signature in pregnancy (MSP): longitudinal high-frequency sampling to characterise cross-omic trajectories in pregnancy in a resource-constrained setting. BMJ open, 10(10), e041631. https://doi.org/10.1136/bmjopen-2020-041631

Kaltenbach, Hans-Michael, Rudolf, Fabian, Linnik, Janina, Deichmann, Julia, Ruf, Therese, Altamura, Raffaele, Kapetanovic, Edo, Mason, Derek, Wagner, Bastian, Goetz, Thomas, Mundorff, Lukas, Stoll-Rudin, Karin, Krebs, Christina, Renz, Tanja, Hochueli, Thomas, Haymoz, Sergio, Hosch, Markus, Périat, Nadine, Richert, Michèle, et al. (2020). Initial characterisation of commercially available ELISA tests and the immune response of the clinically correlated SARS-CoV-2 biobank “SERO-BL-COVID-19” collected during the pandemic onset in Switzerland. medRxiv, 2020. https://doi.org/10.1101/2020.07.05.20145888

Ndege, Robert, Ngome, Omary, Bani, Farida, Temba, Yvan, Wilson, Herieth, Vanobberghen, Fiona, Hella, Jerry, Gingo, Winfrid, Sasamalo, Mohamed, Mnzava, Dorcas, Kimera, Namvua, Hiza, Helen, Wigayi, John, Mapesi, Herry, Kato, Irene B., Mhimbira, Francis, Reither, Klaus, Battegay, Manuel, Paris, Daniel H., et al. (2020). Ultrasound in managing extrapulmonary tuberculosis: a randomized controlled two-center study. BMC infectious diseases, 20(1), 349. https://doi.org/10.1186/s12879-020-05073-9

Paris, D. H. (2020). Special issue “The past and present threat of rickettsial diseases”. Trop Med Infect Dis, 5(4), 187. https://doi.org/10.3390/tropicalmed5040187

Paris, D. H., Kelly, D. J., Fuerst, P. A., Day, N. P. J., & Richards, A. L. (2020). A brief history of the major rickettsioses in the Asia-Australia-Pacific region: a capstone review for the special issue of TMID. Trop Med Infect Dis, 5(4), 156. https://doi.org/10.3390/tropicalmed5040165

Wangrangsimakul, Tri, Greer, Rachel C., Chanta, Chulapong, Nedsuwan, Supalert, Blacksell, Stuart D., Day, Nicholas P. J., & Paris, Daniel H. (2020). Clinical characteristics and outcome of children hospitalized with scrub typhus in an area of endemicity. Journal of the Pediatric Infectious Diseases Society, 9(2), 202–209. https://doi.org/10.1093/jpids/piz014

West, E. A., Anker, D., Amati, R., Richard, A., Wisniak, A., Butty, A., Albanese, E., Bochud, M., Chiolero, A., Crivelli, L., Cullati, S., d’Acremont, V., Epure, A. M., Fehr, J., Flahault, A., Fornerod, L., Frank, I., Frei, A., Michel, G., et al. (2020). Corona immunitas: study protocol of a nationwide program of SARS-CoV-2 seroprevalence and seroepidemiologic studies in Switzerland. International journal of public health, 65(9), 1529–1548. https://doi.org/10.1007/s00038-020-01494-0

Veit, O., Neumayr, A., Beck, B., Staehelin, C., Schlagenhauf, P., Eperon. G.: Chappuis. F., Niederer-Loher, A., Antonini, P., Etter, H., Fehr, J., Landry, P., Stoeckle, M., Furrer, H., Paris, D., de Vallière, S., Hatz, C., & Genton, B. (2019). Aktualisierte Empfehlungen des Schweizerischen Expertenkomitees für Reisemedizin zur Prävention einer Malaria bei Reisenden 2019: angepasster Einsatz der notfallmässigen Selbstbehandlung (NSB) und der medikamentösen Prophylaxe. BAG Bulletin, 2019(30), 8–13.

Albrecht, Sascha, Franzeck, Fabian C., Mapesi, Herry, Hatz, Christoph, Kalinjuma, Aneth Vedastus, Glass, Tracy R., Mnzava, Dorcas, Letang, Emili, Paris, Daniel H., Battegay, Manuel, Weisser, Maja, & Kiularco Study Group,. (2019). Age-related comorbidities and mortality in people living with HIV in rural Tanzania. AIDS, 33(6), 1031–1041. https://doi.org/10.1097/qad.0000000000002171

Antonini, P., Beck, B., Chappuis, F., Eperon, G., Etter, H., Fehr, J., Furrer, H., Genton, B., Hatz, C., Landry, P., Neumayr, A., Niederer-Loher, A., Paris, D., Schlagenhauf, P., Staehelin, C., Stoeckle, M., De Vallière, S., & Veit, O. (2019, January 1). Reisemedizin: Impfungen und Malariaschutz bei Auslandreisen. Empfehlungen Stand Juni 2019. BAG-Bulletin, 14–53.

Brummaier, Tobias, Bertschy, Sonja, Arn, Kornelius, Treumann, Thomas, Ruf, Marie-Therese, Nickel, Beatrice, Paris, Daniel H., Neumayr, Andreas, & Blum, Johannes. (2019). A blind passenger : a rare case of documented seroconversion in an; Angiostrongylus cantonensis; induced eosinophilic meningitis in a traveler visiting friends and relatives. Tropical Diseases, Travel Medicine and Vaccines, 5, 6. https://doi.org/10.1186/s40794-019-0084-x

Brummaier, T. Syed Ahamed Kabeer, B. Lindow, S. Konje, J. C. Pukrittayaamee, S. Utzinger, J. Toufiq, M. Antoniou, A. Marr, A. K. Suriyakan, S. Kino, T. Al Khodor, S. Terranegra, A. Nosten, F. Paris, D. H. McGready, & R. Chaussabel, D. (2019). A prospective cohort for the investigation of alteration in temporal transcriptional and microbiome trajectories preceding preterm birth : a study protocol. BMJ Open, 9(1), e023417. https://doi.org/10.1136/bmjopen-2018-023417

Chernet, Afona, Probst-Hensch, Nicole, Sydow, Véronique, Paris, Daniel H., Neumayr, Andreas, & Labhardt, Niklaus D. (2019). Cardiovascular diseases risk factors among recently arrived Eritrean refugees in Switzerland. BMC Research Notes, 12(1), 668. https://doi.org/10.1186/s13104-019-4715-0

Kaehler, Nils, Adhikari, Bipin, Cheah, Phaik Yeong, Day, Nicholas P. J., Paris, Daniel H., Tanner, Marcel, & Pell, Christopher. (2019). The promise, problems and pitfalls of mass drug administration for malaria elimination : a qualitative study with scientists and policymakers. International health, 11(3), 166–176. https://doi.org/10.1093/inthealth/ihy079

Kaehler, Nils, Adhikari, Bipin, Cheah, Phaik Yeong, von Seidlein, Lorenz, Day, Nicholas P. J., Paris, Daniel H., Tanner, Marcel, & Pell, Christopher. (2019). Prospects and strategies for malaria elimination in the Greater Mekong Sub-region: a qualitative study. Malaria Journal, 18(1), 203. https://doi.org/10.1186/s12936-019-2835-6

Katoh, S., Cuong, N. C., Hamaguchi, S., Thuy, P. T., Cuong, D. D., Anh, L. K., Anh, N. T. H., Anh, D. D., Sando, E., Suzuki, M., Fujita, H., Yasunami, M., Yoshihara, K., Yoshida, L. M., Paris, D. H., & Ariyoshi, K. (2019). Challenges in diagnosing scrub typhus among hospitalized patients with undifferentiated fever at a national tertiary hospital in northern Vietnam. PLoS Neglected Tropical Diseases, 13(12), e0007928. https://doi.org/10.1371/journal.pntd.0007928

Mapesi, Herry, & Paris, Daniel Henry. (2019). Non-communicable diseases on the Rise in sub-Saharan Africa, the underappreciated threat of a dual disease burden. Praxis, 108(15), 997–1005. https://doi.org/10.1024/1661-8157/a003354

Mchomvu, Elisante, Mbunda, Geoffrey, Simon, Noemi, Kitila, Faradji, Temba, Yvan, Msumba, Isaiac, Namamba, Jabir, Kilindimo, Said, Mgubike, Hellen, Gingo, Winfrid, Hatz, Christoph, Paris, Daniel H., Weisser, Maja, & Rohacek, Martin. (2019). Diagnoses made in an emergency department in rural sub-Saharan Africa. Swiss medical weekly, 149, w20018. https://doi.org/10.4414/smw.2019.20018

Ndege, Robert, Weisser, Maja, Elzi, Luigia, Diggelmann, Flavia, Bani, Farida, Gingo, Winfrid, Sikalengo, George, Mapesi, Herry, Mchomvu, Elisante, Kamwela, Lujeko, Mnzava, Dorcas, Battegay, Manuel, Reither, Klaus, Paris, Daniel H., & Rohacek, Martin. (2019). Sonography to rule out tuberculosis in sub-Saharan Africa: a prospective observational study. Open Forum Infectious Diseases, 6(4), ofz154. https://doi.org/10.1093/ofid/ofz154

Neumayr, Andreas, Chernet, Afona, Sydow, Véronique, Kling, Kerstin, Kuenzli, Esther, Marti, Hanspeter, Paris, Daniel H., Nickel, Beatrice, & Labhardt, Niklaus D. (2019). Performance of the point-of-care circulating cathodic antigen (POC-CCA) urine cassette test for follow-up after treatment of S. mansoni infection in Eritrean refugees. Travel Medicine and Infectious Disease, 28, 59–63. https://doi.org/10.1016/j.tmaid.2018.09.004

Newton, Paul N., Keolouangkhot, Valy, Lee, Sue J., Choumlivong, Khamla, Sisouphone, Siho, Choumlivong, Khamloune, Vongsouvath, Manivanh, Mayxay, Mayfong, Chansamouth, Vilada, Davong, Viengmon, Phommasone, Koukeo, Sirisouk, Joy, Blacksell, Stuart D., Nawtaisong, Pruksa, Moore, Catrin E., Castonguay-Vanier, Josée, Dittrich, Sabine, Rattanavong, Sayaphet, Chang, Ko, et al. (2019). A prospective, open-label, randomized trial of doxycycline versus azithromycin for the treatment of uncomplicated murine typhus. Clinical Infectious Diseases, 68(5), 738–747. https://doi.org/10.1093/cid/ciy563

Phanichkrivalkosil, Meghna, Tanganuchitcharnchai, Ampai, Jintaworn, Suthatip, Kantipong, Pacharee, Laongnualpanich, Achara, Chierakul, Wirongrong, Paris, Daniel H., Richards, Allen L., Wangrangsimakul, Tri, Day, Nicholas P. J., & Blacksell, Stuart D. (2019). Determination of optimal diagnostic cut-offs for the naval medical research centre scrub typhus IgM ELISA in Chiang Rai, Thailand. American Journal of Tropical Medicine and Hygiene, 100(5), 1134–1140. https://doi.org/10.4269/ajtmh.18-0675

Phuklia, Weerawat, Panyanivong, Phonepasith, Sengdetka, Davanh, Sonthayanon, Piengchan, Newton, Paul N., Paris, Daniel H., Day, Nicholas P. J., & Dittrich, Sabine. (2019). Novel high-throughput screening method using quantitative PCR to determine the antimicrobial susceptibility of Orientia tsutsugamushi clinical isolates. The journal of antimicrobial chemotherapy, 74(1), 74–81. https://doi.org/10.1093/jac/dky402

Schlaeppi, C., Vanobberghen, F., Sikalengo, G., Glass, T. R., Ndege, R. C., Foe, G., Kuemmerle, A., Paris, D. H., Battegay, M., Marzolini, C., Weisser, M., & Kilombero Ulanga Antiretroviral Cohort study group. (2019). Prevalence and management of drug-drug interactions with antiretroviral treatment in 2069 people living with HIV in rural Tanzania: a prospective cohort study. HIV Medicine, 21(1), 53–63. https://doi.org/10.1111/hiv.12801

Staehelin, Cornelia, Chernet, Afona, Sydow, Véronique, Piso, Rein J., Suter-Riniker, Franziska, Funez, Sabine, Nickel, Beatrice, Paris, Daniel H., & Labhardt, Niklaus D. (2019). Seroprotection rates of vaccine-preventable diseases among newly arrived Eritrean asylum seekers in Switzerland : a cross-sectional study. Journal of Travel Medicine, 26(6), taz035. https://doi.org/10.1093/jtm/taz035

Sungvornyothin, Sungsit, Kumlert, Rawadee, Paris, Daniel H., Prasartvit, Anchana, Sonthayanon, Piengchan, Apiwathnasorn, Chamnarn, Morand, Serge, Stekolnikov, Alexandr A., & Sumruayphol, Suchada. (2019). Geometric morphometrics of the scutum for differentiation of trombiculid mites within the genus Walchia (Acariformes: Prostigmata : trombiculidae), a probable vector of scrub typhus. Ticks and Tick-Borne Diseases, 10(2), 495–503. https://doi.org/10.1016/j.ttbdis.2018.11.013

Veit, O., Neumayr, A., Beck, B., Staehelin, C., Schlagenhauf, P., Eperon, G., Chappuis, F., Niederer-Loher, A., Antonini, P., Etter, H., Fehr, J., Landry, P., Stoeckle, M., Furrer, H., Paris, D., de Vallière, S., Hatz, C., & Genton, B. (2019, January 1). Aktualisierte Empfehlungen des Schweizerischen Expertenkomitees für Reisemedizin zur Prävention einer Malaria bei Reisenden 2019 : angepasster Einsatz der notfallmässigen Selbstbehandlung (NSB) und der medikamentösen Prophylaxe. BAG Bulletin, 8–11.

Yuhana, Yazli, Tanganuchitcharnchai, Ampai, Sujariyakul, Pimpan, Sonthayanon, Piengchan, Chotivanich, Kesinee, Paris, Daniel H., Pukrittayakamee, Sasithon, Blacksell, Stuart D., & Hanboonkunupakarn, Borimas. (2019). Diagnosis of murine typhus by serology in Peninsular Malaysia: a case report where rickettsial illnesses, leptospirosis and dengue co-circulate. Tropical Medicine and Infectious Disease, 4(1), 23. https://doi.org/10.3390/tropicalmed4010023

Paris DH, & Neumayr A. (2018). Ticks and tick-borne infections in Asia: Implications for travellers. Travel Medicine and Infectious Disease, 26, 3–4. https://doi.org/10.1016/j.tmaid.2018.11.009

Fleshman A, Mullins K, Sahl J, Hepp C, Nieto N, Wiggins K, Hornstra H, Kelly D, Chan TC, Phetsouvanh R, Dittrich S, Panyanivong P, Paris D, Newton P, Richards A, & Pearson T. (2018). Corrigendum: Comparative pan-genomic analyses of orientia tsutsugamushi reveal an exceptional model of bacterial evolution driving genomic diversity (Microbial Genomics (2018),4, 10.1099/mgen.0.000199). Microbial Genomics, 4(10). https://doi.org/10.1099/mgen.0.000230

Evans, S. M., Adcox, H. E., VieBrock, L., Green, R. S., Luce-Fedrow, A., Chattopadhyay, S., Jiang, J., Marconi, R. T., Paris, D., Richards, A. L., & Carlyon, J. A. (2018, April 11). Outer Membrane Protein A Conservation among <em>Orientia tsutsugamushi</em> Isolates Suggests Its Potential as a Protective Antigen and Diagnostic Target [Posted-content]. MDPI AG. https://doi.org/10.20944/preprints201804.0141.v1

Batty, E. M., Chaemchuen, S., Blacksell, S., Richards, A., Paris, D., Bowden, R., Chan, C., Lachumanan, R., Day, N., Donnelly, P., Chen, S., & Salje, J. (2018). Long-read whole genome sequencing and comparative analysis of six strains of the human pathogen Orientia tsutsugamushi. PLoS Neglected Tropical Diseases, 12(6), e0006566. https://doi.org/10.1371/journal.pntd.0006566