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[FG] Egli Adrian

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Linnik J et al. (2022) ‘Association of Host Factors With Antibody Response to Seasonal Influenza Vaccination in Allogeneic Hematopoietic Stem Cell Transplant Patients’, Journal of Infectious Diseases, 225(8), pp. 1482–1493. Available at: https://doi.org/10.1093/infdis/jiab391.

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Kohler P et al. (2022) ‘Molecular Epidemiology and Risk Factors for Extended-Spectrum β-Lactamase–Producing Enterobacterales in Long-Term Care Residents’, Journal of the American Medical Directors Association, 23(3), pp. 475–481.e5. Available at: https://doi.org/10.1016/j.jamda.2021.06.030.

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Büchler AC et al. (2022) ‘Nosocomial transmission of a bla VIM-2 carbapenemase integron between isolates of two different Pseudomonas species’, Infection Control and Hospital Epidemiology, 43(2), pp. 245–247. Available at: https://doi.org/10.1017/ice.2021.39.

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van den Bogaart L. et al. (2022) ‘Epidemiology and outcomes of medically attended and microbiologically confirmed bacterial foodborne infections in solid organ transplant recipients’, American Journal of Transplantation, 22(1), pp. 199–209. Available at: https://doi.org/10.1111/ajt.16831.

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Chen C et al. (2021) ‘Quantification of the spread of SARS-CoV-2 variant B.1.1.7 in Switzerland’, Epidemics, 37, p. 100480. Available at: https://doi.org/10.1016/j.epidem.2021.100480.

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Gehringer C et al. (2021) ‘Accuracy of urine flow cytometry and urine test strip in predicting relevant bacteriuria in different patient populations’, BMC Infectious Diseases, 21(1). Available at: https://doi.org/10.1186/s12879-021-05893-3.

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Søgaard KK et al. (2021) ‘Community-acquired and hospital-acquired respiratory tract infection and bloodstream infection in patients hospitalized with COVID-19 pneumonia’, Journal of Intensive Care, 9(1), p. 10. Available at: https://doi.org/10.1186/s40560-021-00526-y.

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Vock I et al. (2021) ‘Risk factors for colonization with multiple species of extended-spectrum beta-lactamase producing Enterobacterales: a case-case–control study’, Antimicrobial Resistance and Infection Control, 10(1), p. 153. Available at: https://doi.org/10.1186/s13756-021-01018-2.

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Leuzinger K et al. (2021) ‘Comparing Immunoassays for SARS-CoV-2 Antibody Detection in Patients with and without Laboratory-Confirmed SARS-CoV-2 Infection.’, Journal of clinical microbiology, 59(12), p. e0138121. Available at: https://doi.org/10.1128/jcm.01381-21.

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Vandamme P et al. (2021) ‘Gulosibacter hominis sp. nov.: a novel human microbiome bacterium that may cause opportunistic infections’, Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology, 114(11), pp. 1841–1854. Available at: https://doi.org/10.1007/s10482-021-01644-1.

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Büchler AC et al. (2021) ‘Does high adherence to contact precautions lead to low in-hospital transmission of multi-drug-resistant micro-organisms in the endemic setting?’, Journal of Hospital Infection, 116, pp. 53–59. Available at: https://doi.org/10.1016/j.jhin.2021.07.002.

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von Hammerstein AL et al. (2021) ‘Interseasonal rsv infections in switzerland - rapid establishment of a clinician-led national reporting system (rsv epich)’, Swiss Medical Weekly, 151(35-36), p. w30057. Available at: https://doi.org/10.4414/SMW.2021.w30057.

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Goldenberger D et al. (2021) ‘Cutibacterium modestum and “Propionibacterium humerusii” represent the same species that is commonly misidentified as Cutibacterium acnes’, Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology, 114(8), pp. 1315–1320. Available at: https://doi.org/10.1007/s10482-021-01589-5.

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Aguilar-Bultet L et al. (2021) ‘Identification of a Cluster of Extended-spectrum Beta-Lactamase-Producing Klebsiella pneumoniae Sequence Type 101 Isolated from Food and Humans’, Clinical Infectious Diseases, 73(2), pp. 332–335. Available at: https://doi.org/10.1093/cid/ciaa1164.

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Jusková P et al. (2021) ‘Real-Time Respiration Changes as a Viability Indicator for Rapid Antibiotic Susceptibility Testing in a Microfluidic Chamber Array’, ACS Sensors, 6(6), pp. 2202–2210. Available at: https://doi.org/10.1021/acssensors.1c00020.

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Seth-Smith HMB et al. (2021) ‘Transition From PCR-Ribotyping to Whole Genome Sequencing Based Typing of Clostridioides difficile’, Frontiers in Cellular and Infection Microbiology, 11, p. 681518. Available at: https://doi.org/10.3389/fcimb.2021.681518.

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Coste AT, Egli A and Greub G (2021) ‘Self-testing for SARS-CoV-2: Importance of lay communication’, Swiss Medical Weekly, 151(21-22), p. w20526. Available at: https://doi.org/10.4414/smw.2021.20526.

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Hinić V et al. (2021) ‘Unexpected Mycoplasma hominis infection in two renal transplant recipients traced back to the same donor by whole-genome sequencing’, European Journal of Clinical Microbiology and Infectious Diseases, 40(5), pp. 1097–1102. Available at: https://doi.org/10.1007/s10096-020-04116-y.

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Mombelli M et al. (2021) ‘Burden, epidemiology, and outcomes of microbiologically confirmed respiratory viral infections in solid organ transplant recipients: a nationwide, multi-season prospective cohort study’, American Journal of Transplantation, 21(5), pp. 1789–1800. Available at: https://doi.org/10.1111/ajt.16383.

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Vock I et al. (2021) ‘Infections in Patients Colonized with Extended-spectrum Beta-Lactamase-Producing Enterobacterales: A Retrospective Cohort Study’, Clinical Infectious Diseases, 72(8), pp. 1440–1443. Available at: https://doi.org/10.1093/cid/ciaa895.

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Caruana G et al. (2021) ‘Implementing sars-cov-2 rapid antigen testing in the emergency ward of a swiss university hospital: The increase study’, Microorganisms, 9(4). Available at: https://doi.org/10.3390/microorganisms9040798.

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Leuzinger K et al. (2021) ‘Epidemiology and precision of SARS-CoV-2 detection following lockdown and relaxation measures’, Journal of Medical Virology, 93(4), pp. 2374–2384. Available at: https://doi.org/10.1002/jmv.26731.

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Cuénod A et al. (2021) ‘Factors Associated With MALDI-TOF Mass Spectral Quality of Species Identification in Clinical Routine Diagnostics’, Frontiers in Cellular and Infection Microbiology, 11, p. 646648. Available at: https://doi.org/10.3389/fcimb.2021.646648.

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Zanella MC et al. (2021) ‘Unexpectedly High False-Positive Rates for Haemophilus influenzae Using a Meningoencephalitis Syndromic PCR Panel in Two Tertiary Centers’, Frontiers in Cellular and Infection Microbiology, 11, p. 639658. Available at: https://doi.org/10.3389/fcimb.2021.639658.

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Leuzinger K et al. (2021) ‘Corrigendum to: Epidemiology of Severe Acute Respiratory Syndrome Coronavirus 2 Emergence Amidst Community-Acquired Respiratory Viruses.’, The Journal of infectious diseases, 223(4), pp. 734–735. Available at: https://doi.org/10.1093/infdis/jiaa667.

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Capoferri G et al. (2021) ‘Relative bradycardia in patients with COVID-19’, 27(2). Available at: https://doi.org/10.1016/j.cmi.2020.08.013.

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Huber F et al. (2021) ‘Rapid and Ultrasensitive Detection of Mutations and Genes Relevant to Antimicrobial Resistance in Bacteria’, Global Challenges, 5(2), p. 2000066. Available at: https://doi.org/10.1002/gch2.202000066.

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Amacher, Simon A. et al. (2021) ‘Bilateral acute renal cortical necrosis after a dog bite: case report’, BMC Infectious Diseases, 21(1), p. 231. Available at: https://doi.org/10.1186/s12879-021-05901-6.

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Benz, Fabienne et al. (2021) ‘Plasmid- and strain-specific factors drive variation in ESBL-plasmid spread in vitro and in vivo’, The ISME journal, 15(3), pp. 862–878. Available at: https://doi.org/10.1038/s41396-020-00819-4.

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Cuénod, A. et al. (2021) ‘Whole-genome sequence-informed MALDI-TOF MS diagnostics reveal importance of Klebsiella oxytoca group in invasive infections: a retrospective clinical study’, Genome Med, 13(1), p. 150. Available at: https://doi.org/10.1186/s13073-021-00960-5.

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Diard, Médéric et al. (2021) ‘A rationally designed oral vaccine induces immunoglobulin A in the murine gut that directs the evolution of attenuated Salmonella variants’, Nature Microbiology, 6(7), pp. 830–841. Available at: https://doi.org/10.1038/s41564-021-00911-1.

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Durovic A et al. (2021) ‘Two simultaneous cases of disseminated infections with Campylobacter fetus: clinical characteristics and molecular comparison’, 27(1). Available at: https://doi.org/10.1016/j.cmi.2020.07.018.

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Goncalves Cabecinhas, Ana Rita et al. (2021) ‘SARS-CoV-2 N501Y Introductions and Transmissions in Switzerland from Beginning of October 2020 to February 2021-Implementation of Swiss-Wide Diagnostic Screening and Whole Genome Sequencing’, Microorganisms, 9(4), p. 9040677. Available at: https://doi.org/10.3390/microorganisms9040677.

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Mari, Alfredo et al. (2021) ‘Global Genomic Analysis of SARS-CoV-2 RNA Dependent RNA Polymerase Evolution and Antiviral Drug Resistance’, Microorganisms, 9(5), p. 1094. Available at: https://doi.org/10.3390/microorganisms9051094.

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Santi, Isabella et al. (2021) ‘Evolution of Antibiotic Tolerance Shapes Resistance Development in Chronic Pseudomonas aeruginosa Infections’, mBio, 12(1), pp. e03482–20. Available at: https://doi.org/10.1128/mbio.03482-20.

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Seth-Smith HMB et al. (2021) ‘Ongoing evolution of chlamydia trachomatis lymphogranuloma venereum: Exploring the genomic diversity of circulating strains’, Microbial Genomics, 7(6). Available at: https://doi.org/10.1099/MGEN.0.000599.

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Stadler, Rahel N. et al. (2021) ‘Systematic screening on admission for SARS-CoV-2 to detect asymptomatic infections’, Antimicrobial resistance and infection control, 10(1), p. 44. Available at: https://doi.org/10.1186/s13756-021-00912-z.

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Stange, Madlen et al. (2021) ‘SARS-CoV-2 outbreak in a tri-national urban area is dominated by a B.1 lineage variant linked to a mass gathering event’, PLoS Pathogens, 17(3), p. ARTN e1009374. Available at: https://doi.org/10.1371/journal.ppat.1009374.

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Weis C et al. (2021) ‘Topological and kernel-based microbial phenotype prediction from MALDI-TOF mass spectra’, Bioinformatics, 36(Suppl_1), pp. I30–I38. Available at: https://doi.org/10.1093/BIOINFORMATICS/BTAA429.

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Dylus D et al. (2020) ‘NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test’, Frontiers in Microbiology, 11, p. 591093. Available at: https://doi.org/10.3389/fmicb.2020.591093.

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Greub G et al. (2020) ‘Clinical bioinformatics for microbial genomics and metagenomics: an ESCMID Postgraduate Technical Workshop’, Microbes and Infection, 22(10), pp. 626–634. Available at: https://doi.org/10.1016/j.micinf.2020.07.008.

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Leuzinger K et al. (2020) ‘Epidemiology of severe acute respiratory syndrome Coronavirus 2 emergence amidst community-acquired respiratory viruses’, Journal of Infectious Diseases, 222(8), pp. 1270–1279. Available at: https://doi.org/10.1093/infdis/jiaa464.

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Syedbasha M et al. (2020) ‘Interferon-λ Enhances the Differentiation of Naive B Cells into Plasmablasts via the mTORC1 Pathway’, Cell Reports, 33(1), p. 108211. Available at: https://doi.org/10.1016/j.celrep.2020.108211.

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Egli A (2020) ‘Digitalization, clinical microbiology and infectious diseases’, 26(10). Available at: https://doi.org/10.1016/j.cmi.2020.06.031.

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Egli A, Schrenzel J and Greub G (2020) ‘Digital microbiology’, Clinical Microbiology and Infection, 26(10), pp. 1324–1331. Available at: https://doi.org/10.1016/j.cmi.2020.06.023.

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Goldenberger D et al. (2020) ‘Brief validation of the novel GeneXpert Xpress SARS-CoV-2 PCR assay’, Journal of Virological Methods, 284. Available at: https://doi.org/10.1016/j.jviromet.2020.113925.

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Kuenzli AB et al. (2020) ‘Successful management of a Clostridioides difficile ribotype 027 outbreak with a lean intervention bundle’, Journal of Hospital Infection, 106(2), pp. 240–245. Available at: https://doi.org/10.1016/j.jhin.2020.07.034.

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Mansella G et al. (2020) ‘COVID-19 triage and test center: Safety, feasibility, and outcomes of low-threshold testing’, Journal of Clinical Medicine, 9(10), pp. 1–17. Available at: https://doi.org/10.3390/jcm9103217.

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Jutzeler CR et al. (2020) ‘Comorbidities, clinical signs and symptoms, laboratory findings, imaging features, treatment strategies, and outcomes in adult and pediatric patients with COVID-19: A systematic review and meta-analysis’, Travel Medicine and Infectious Disease, 37, p. 101825. Available at: https://doi.org/10.1016/j.tmaid.2020.101825.

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Moser S et al. (2020) ‘Campylobacter jejuni from canine and bovine cases of campylobacteriosis express high antimicrobial resistance rates against (Fluoro)quinolones and tetracyclines’, Pathogens, 9(9), pp. 1–10. Available at: https://doi.org/10.3390/pathogens9090691.

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Egli A et al. (2020) ‘SPHN/PHRT: Forming a Swiss-wide infrastructure for data-driven sepsis research’, Studies in Health Technology and Informatics, 270, pp. 1163–1167. Available at: https://doi.org/10.3233/SHTI200346.

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Seth-Smith HMB et al. (2020) ‘Bloodstream infection with Candida kefyr/Kluyveromyces marxianus: case report and draft genome’, 26(4). Available at: https://doi.org/10.1016/j.cmi.2019.11.014.

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Lo Priore E et al. (2020) ‘Burkholderia cepacia complex outbreak originating from contaminated wash gloves’, Infection Prevention in Practice, 2(1), p. 100039. Available at: https://doi.org/10.1016/j.infpip.2020.100039.

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Meyer Sauteur P.M. et al. (2020) ‘Siblings with typhoid fever: An investigation of intrafamilial transmission, clonality, and antibiotic susceptibility’, Travel Medicine and Infectious Disease, 34. Available at: https://doi.org/10.1016/j.tmaid.2019.101498.

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Bernard KA et al. (2020) ‘Emendation of the Genus Auritidibacter Yassin et al. 2011 and Auritidibacter Ignavus Yassin et al. 2011 based on features observed from canadian and swiss clinical isolates and whole-genome sequencing analysis’, International Journal of Systematic and Evolutionary Microbiology, 70(1), pp. 83–88. Available at: https://doi.org/10.1099/ijsem.0.003719.

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Dittrich, Tolga et al. (2020) ‘Predictors of infectious meningitis or encephalitis: the yield of cerebrospinal fluid in a cross-sectional study’, BMC infectious diseases, 20(1), p. 304. Available at: https://doi.org/10.1186/s12879-020-05022-6.

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Goldenberger, Daniel et al. (2020) ‘First case of IMP-15-producing Pseudomonas aeruginosa in Switzerland: Challenging laboratory diagnosis using whole genome sequencing (WGS)’, IDCases, 22, p. e00933. Available at: https://doi.org/10.1016/j.idcr.2020.e00933.

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Marzolini, Catia et al. (2020) ‘Effect of Systemic Inflammatory Response to SARS-CoV-2 on Lopinavir and Hydroxychloroquine Plasma Concentrations’, Antimicrobial Agents and Chemotherapy, 64(9), pp. e01177–20. Available at: https://doi.org/10.1128/aac.01177-20.

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Müller, Nicola F. et al. (2020) ‘Characterising the epidemic spread of influenza A/H3N2 within a city through phylogenetics’, PLoS Pathogens, 16(11), p. e1008984. Available at: https://doi.org/10.1371/journal.ppat.1008984.

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Sah, Ranjit et al. (2020) ‘A novel lineage of ceftriaxone-resistant Salmonella Typhi from India that is closely related to XDR S. Typhi found in Pakistan’, Clinical Infectious Diseases, 71(5), pp. 1327–1330. Available at: https://doi.org/10.1093/cid/ciz1204.

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Scire, J. et al. (2020) ‘Reproductive number of the COVID-19 epidemic in Switzerland with a focus on the Cantons of Basel-Stadt and Basel-Landschaft’, Swiss Med Wkly, 150, p. w20271. Available at: https://doi.org/10.4414/smw.2020.20271.

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Vock I et al. (2020) ‘Independent, external validation of clinical prediction rules for the identification of extended-spectrum β-lactamase-producing Enterobacterales, University Hospital Basel, Switzerland, January 2010 to December 2016’, Eurosurveillance, 25(26). Available at: https://doi.org/10.2807/1560-7917.ES.2020.25.26.1900317.

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Zingg, Sandra et al. (2020) ‘Cefiderocol for Extensively Drug-Resistant Gram-Negative Bacterial Infections: Real-world Experience From a Case Series and Review of the Literature’, Open Forum Infectious Diseases, 7(6), p. ofaa185. Available at: https://doi.org/10.1093/ofid/ofaa185.

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Mauramo M et al. (2019) ‘Dissociations of oral foci of infections with infectious complications and survival after haematopoietic stem cell transplantation’, PLoS ONE, 14(12), p. e0225099. Available at: https://doi.org/10.1371/journal.pone.0225099.

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Casanova C et al. (2019) ‘Agrobacterium spp. nosocomial outbreak assessment using rapid MALDI-TOF MS based typing, confirmed by whole genome sequencing’, Antimicrobial Resistance and Infection Control, 8(1), p. 171. Available at: https://doi.org/10.1186/s13756-019-0619-y.

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Goldenberger D. et al. (2019) ‘Emerging anaerobic and partially acid-fast Lawsonella clevelandensis: extended characterization by antimicrobial susceptibility testing and whole genome sequencing’, Clinical Microbiology and Infection, 25(11), pp. 1447–1448. Available at: https://doi.org/10.1016/j.cmi.2019.07.008.

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Avery LM et al. (2019) ‘Pharmacodynamics of daptomycin in combination with other antibiotics for the treatment of enterococcal bacteraemia’, International Journal of Antimicrobial Agents, 54(3), pp. 346–350. Available at: https://doi.org/10.1016/j.ijantimicag.2019.07.002.

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Gürtler N et al. (2019) ‘Influence of a resin-based blood culture medium on the time to clearance of methicillin-susceptible Staphylococcus aureus bloodstream infection – A retrospective cohort study’, Diagnostic Microbiology and Infectious Disease, 95(1), pp. 25–27. Available at: https://doi.org/10.1016/j.diagmicrobio.2019.04.010.

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Fulchini R et al. (2019) ‘Antibiotic-resistant pathogens in different patient settings and identification of surveillance gaps in Switzerland - a systematic review’, Epidemiology and infection, 147, p. e259. Available at: https://doi.org/10.1017/S0950268819001523.

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Avery LM et al. (2019) ‘Reply to Cheng and Chuang’, Clinical Infectious Diseases, 69(5), pp. 903–904. Available at: https://doi.org/10.1093/cid/ciz081.

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Seth-Smith HMB et al. (2019) ‘Complete genome assembly of an auritidibacter ignavus isolate obtained from an ear infection in Switzerland and a comparison to global isolates’, Microbiology Resource Announcements, 8(28). Available at: https://doi.org/10.1128/MRA.00291-19.

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Kuehl, Richard et al. (2019) ‘High mortality of non-fournier necrotizing fasciitis with enterobacteriales: Time to rethink classification?’, Clinical Infectious Diseases, 69(1), pp. 147–150. Available at: https://doi.org/10.1093/cid/ciy1011.

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Gürtler N et al. (2019) ‘Prosthetic valve endocarditis caused by Pseudomonas aeruginosa with variable antibacterial resistance profiles: A diagnostic challenge’, BMC Infectious Diseases, 19(1), p. 530. Available at: https://doi.org/10.1186/s12879-019-4164-3.

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Seth-Smith H.M.B. et al. (2019) ‘Phenotypic and genomic analyses of Burkholderia stabilis clinical contamination, Switzerland’, Emerging Infectious Diseases, 25(6), pp. 1084–1092. Available at: https://doi.org/10.3201/eid2506.172119.

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Avery LM et al. (2019) ‘Pharmacodynamic Analysis of Daptomycin-treated Enterococcal Bacteremia: It is time to change the breakpoint’, Clinical Infectious Diseases, 68(10), pp. 1650–1657. Available at: https://doi.org/10.1093/cid/ciy749.

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Seiffert SN et al. (2019) ‘First clinical case of KPC-3–producing Klebsiella michiganensis in Europe’, New Microbes and New Infections. 23.02.2019, 29, p. 100516. Available at: https://doi.org/10.1016/j.nmni.2019.100516.

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Wüthrich D et al. (2019) ‘Genomic characterization of inpatient evolution of MRSA resistant to daptomycin, vancomycin and ceftaroline’, 74(5). Available at: https://doi.org/10.1093/jac/dkz003.

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Emmanuel Martinez, Aurélien et al. (2019) ‘ESBL-colonization at ICU admission: Impact on subsequent infection, carbapenem-consumption, and outcome’, Infection Control and Hospital Epidemiology, 40(4), pp. 408–413. Available at: https://doi.org/10.1017/ice.2019.5.

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Wüthrich, Daniel et al. (2019) ‘Air-conditioner cooling towers as complex reservoirs and continuous source of Legionella pneumophila infection evidenced by a genomic analysis study in 2017, Switzerland’, Eurosurveillance, 24(4). Available at: https://doi.org/10.2807/1560-7917.es.2019.24.4.1800192.

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Agnetti, Jessica et al. (2019) ‘Clinical impact of the type VI secretion system on virulence of Campylobacter species during infection’, BMC infectious diseases, 19(1), p. 237. Available at: https://doi.org/10.1186/s12879-019-3858-x.

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Bakkeren, Erik et al. (2019) ‘Salmonella persisters promote the spread of antibiotic resistance plasmids in the gut’, Nature, 573(7773), pp. 276–280. Available at: https://doi.org/10.1038/s41586-019-1521-8.

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Cunrath, Olivier et al. (2019) ‘Quantitative contribution of efflux to multi-drug resistance of clinical Escherichia coli and Pseudomonas aeruginosa strains’, EBioMedicine, 41, pp. 479–487. Available at: https://doi.org/10.1016/j.ebiom.2019.02.061.

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Egli, Adrian et al. (2019) ‘Symposium report: One Health meets sequencing’, Microbes and Infection, 22(1), pp. 1–7. Available at: https://doi.org/10.1016/j.micinf.2019.07.004.

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Egli, Adrian et al. (2019) ‘Identification of influenza urban transmission patterns by geographical, epidemiological and whole genome sequencing data: protocol for an observational study’, BMJ Open, 9(8), p. e030913. Available at: https://doi.org/10.1136/bmjopen-2019-030913.

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Kuehl R et al. (2019) ‘Time-dependent differences in management and microbiology of orthopaedic internal fixation-associated infections: an observational prospective study with 229 patients’, Clinical Microbiology and Infection, 25(1), pp. 76–81. Available at: https://doi.org/10.1016/j.cmi.2018.03.040.

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Kuenzli, Esther et al. (2019) ‘Impact of alcohol-based hand-gel sanitizer and hand hygiene advice on travellers” diarrhoea and colonization with extended-spectrum beta-lactamase-producing Enterobacteriaceae: a randomised, controlled trial’, Travel medicine and infectious disease, 32, p. 101475. Available at: https://doi.org/10.1016/j.tmaid.2019.101475.

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Seth-Smith HMB et al. (2019) ‘Evaluation of rapid library preparation protocols for whole genome sequencing based outbreak investigation’, Frontiers in Public Health, 7(AUG), p. 241. Available at: https://doi.org/10.3389/fpubh.2019.00241.

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Seth-Smith HMB and Egli A (2019) ‘Whole genome sequencing for surveillance of diphtheria in low incidence settings’, Frontiers in Public Health, 7(AUG), p. 235. Available at: https://doi.org/10.3389/fpubh.2019.00235.

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Wüthrich, Daniel et al. (2019) ‘Evaluation of two workflows for whole genome sequencing-based typing of influenza A viruses’, Journal of Virological Methods, 266, pp. 30–33. Available at: https://doi.org/10.1016/j.jviromet.2019.01.009.

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Erb S et al. (2018) ‘Basic patient characteristics predict antimicrobial resistance in E. coli from urinary tract specimens: a retrospective cohort analysis of 5246 urine samples.’, Swiss medical weekly, 148, p. w14660. Available at: https://doi.org/10.4414/smw.2018.14660.

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Stanczak, Michal A et al. (2018) ‘Self-associated molecular patterns mediate cancer immune evasion by engaging Siglecs on T cells.’, The Journal of clinical investigation. 24.09.2018, 128(11), pp. 4912–4923. Available at: https://doi.org/10.1172/jci120612.

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Jahn, Kathleen et al. (2018) ‘A new type of mediterranean mycobacteriosis’. EUROPEAN RESPIRATORY SOC JOURNALS LTD, 52. Available at: https://doi.org/10.1183/13993003.congress-2018.pa534.

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Hinic V et al. (2018) ‘First report of sexually transmitted multi-drug resistant Shigella sonnei infections in Switzerland, investigated by whole genome sequencing.’, Swiss medical weekly. 22.08.2018, 148, p. w14645. Available at: https://doi.org/10.4414/smw.2018.14645.

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Büchler, Andrea C et al. (2018) ‘Risk factors for colistin-resistant Enterobacteriaceae in a low-endemicity setting for carbapenem resistance - a matched case-control study.’, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 23(30). Available at: https://doi.org/10.2807/1560-7917.es.2018.23.30.1700777.

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Kuehl R et al. (2018) ‘Different Types of Heater-Cooler Units and Their Risk of Transmission of Mycobacterium chimaera During Open-Heart Surgery: Clues From Device Design.’, Infection control and hospital epidemiology. 28.05.2018, 39(7), pp. 834–840. Available at: https://doi.org/10.1017/ice.2018.102.

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