Faculty of Science
Faculty of Science
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Publications
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Fages, A. et al. (2024) ‘Adaptive cellular evolution in the intestinal tracts of hyperdiverse African cichlid fishes’. Cold Spring Harbor Laboratory. Available at: https://doi.org/10.1101/2024.11.28.625862.
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Sommer-Trembo, C. et al. (2024) ‘The genetics of niche-specific behavioral tendencies in an adaptive radiation of cichlid fishes’, Science, 384(6694), pp. 470–475. Available at: https://doi.org/10.1126/science.adj9228.
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Wang, M. et al. (2024) ‘Distinct Gene Regulatory Dynamics Drive Skeletogenic Cell Fate Convergence During Vertebrate Embryogenesis’. Cold Spring Harbor Laboratory. Available at: https://doi.org/10.1101/2024.03.26.586769.
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Atsuta, Yuji et al. (2024) ‘Direct reprogramming of non-limb fibroblasts to cells with properties of limb progenitors’, Developmental Cell, 59(3), pp. 415–430.e8. Available at: https://doi.org/10.1016/j.devcel.2023.12.010.
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Grall, E. et al. (2024) ‘Self-organized BMP signaling dynamics underlie the development and evolution of digit segmentation patterns in birds and mammals’, Proceedings of the National Academy of Sciences of the United States of America, 121(2). Available at: https://doi.org/10.1073/pnas.2304470121.
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Luxey, Maëva et al. (2023) ‘Distinct patterning responses of wing and leg neuromuscular systems to different preaxial polydactylies’, Frontiers in Cell and Developmental Biology, 11. Available at: https://doi.org/10.3389/fcell.2023.1154205.
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Grall, E. et al. (2023) ‘Self-organized BMP signaling dynamics underlie the development and evolution of tetrapod digit patterns’. Cold Spring Harbor Laboratory. Available at: https://doi.org/10.1101/2023.03.28.534660.
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Berki, Bianka et al. (2023) ‘A method to investigate muscle target-specific transcriptional signatures of single motor neurons’, Developmental Dynamics, 252(1), pp. 208–219. Available at: https://doi.org/10.1002/dvdy.507.
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Todd, E.T. et al. (2022) ‘The genomic history and global expansion of domestic donkeys’, Science, 377(6611), pp. 1172–1180. Available at: https://doi.org/10.1126/science.abo3503.
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Clavel, B. et al. (2022) ‘Sex in the city: Uncovering sex-specific management of equine resources from prehistoric times to the Modern Period in France’, Journal of Archaeological Science: Reports, 41. Available at: https://doi.org/10.1016/j.jasrep.2022.103341.
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Berki, Bianka (2022) Plasticity of the neuromuscular system in response to changes in dactyly. . Translated by Tschopp Patrick. Dissertation.
Grall, Emmanuelle (2022) Signaling gradients and self-organization during tetrapod digit pattern formation and evolution. . Translated by Tschopp Patrick. Dissertation.
Lepetz, S. et al. (2021) ‘Historical management of equine resources in France from the Iron Age to the Modern Period’, Journal of Archaeological Science: Reports, 40. Available at: https://doi.org/10.1016/j.jasrep.2021.103250.
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Librado, P. et al. (2021) ‘The origins and spread of domestic horses from the Western Eurasian steppes’, Nature, 598(7882), pp. 634–640. Available at: https://doi.org/10.1038/s41586-021-04018-9.
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Feregrino, Christian and Tschopp, Patrick (2021) ‘Assessing evolutionary and developmental transcriptome dynamics in homologous cell types’, Developmental Dynamics, pp. 1–18. Available at: https://doi.org/10.1002/dvdy.384.
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Sacher, Fabio et al. (2021) ‘Extracellular matrix gene expression signatures as cell type and cell state identifiers’, Matrix Biol Plus, 10, p. 100069. Available at: https://doi.org/10.1016/j.mbplus.2021.100069.
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Dolle, D. et al. (2020) ‘CASCADE: A Custom-Made Archiving System for the Conservation of Ancient DNA Experimental Data’, Frontiers in Ecology and Evolution, 8. Available at: https://doi.org/10.3389/fevo.2020.00185.
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Singh, P. and Schärer, L. (2020) Self-fertilization, but not mating strategy, predicts the evolution of sex allocation plasticity in a hermaphroditic flatworm genus. Cold Spring Harbor Laboratory. Available at: https://doi.org/10.1101/2020.06.12.149351.
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Fages, A. et al. (2020) ‘Horse males became over-represented in archaeological assemblages during the Bronze Age’, Journal of Archaeological Science: Reports, 31. Available at: https://doi.org/10.1016/j.jasrep.2020.102364.
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Brand, Jeremias Nepomuk (2020) The Evolution of Sex Allocation and Hypodermic Insemination across the Flatworm Genus Macrostomum, Zoology. . Translated by Schärer Lukas. University of Basel. Available at: https://edoc.unibas.ch/77830/.
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Jérémy Clément et al. (2020) ‘Les chevaux antiques du plateau iranien. Entre étude philologique, examen iconographique, recherche archéozoologique et analyse paléogénétique’, in Baratay, Eric (ed.), Baratay, Eric (tran.) Croiser les sciences pour lire les animaux. Paris: Éditions de la Sorbonne (Croiser les sciences pour lire les animaux), pp. 65–87. Available at: https://doi.org/10.4000/books.psorbonne.89135.
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Luxey, Maëva et al. (2020) ‘Development of the chick wing and leg neuromuscular systems and their plasticity in response to changes in digit numbers’, Developmental Biology, 458(2), pp. 133–140. Available at: https://doi.org/10.1016/j.ydbio.2019.10.035.
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Singh, Pragya (2020) Evolution of mating behaviour and sex allocation plasticity in simultaneous hermaphrodites, Zoologie. . Translated by Schärer Lukas. University of Basel. Available at: https://edoc.unibas.ch/81342/.
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Darbellay, F. et al. (2019) ‘Constrained Transcriptional Polarity in the Organization of Mammalian Hox Gene Clusters’. Cold Spring Harbor Laboratory. Available at: https://doi.org/10.1101/572875.
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Darbellay, Fabrice et al. (2019) ‘The constrained architecture of mammalian Hox gene clusters’, Proceedings of the National Academy of Sciences, 116(27), pp. 13424–13433. Available at: https://doi.org/10.1073/pnas.1904602116.
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Feregrino, Christian et al. (2019) ‘A single-cell transcriptomic atlas of the developing chicken limb’, BMC Genomics, 20(1), p. 401. Available at: https://doi.org/10.1186/s12864-019-5802-2.
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Grall, Emmanuelle and Tschopp, Patrick (2019) ‘A sense of place, many times over - pattern formation and evolution of repetitive morphological structures’, Developmental Dynamics, 249(3), pp. 313–327. Available at: https://doi.org/10.1002/dvdy.131.
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Vellnow, Nikolas (2018) Sexual Selection and Sex Allocation in a Simultaneous Hermaphrodite: Examining Phenotypic and Genetic Influences, Zoology. . Translated by Schärer Lukas. University of Basel. Available at: https://edoc.unibas.ch/65472/.
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Małecki, Andrzej et al. (2017) ‘Abstracts from the 20th International Symposium on Signal Transduction at the Blood-Brain Barriers’, Fluids and Barriers of the CNS, 14(Suppl 2), pp. 1–23. Available at: https://doi.org/10.1186/s12987-017-0071-4.
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Hiscock, Tom W., Tschopp, Patrick and Tabin, Clifford J. (2017) ‘On the Formation of Digits and Joints during Limb Development’, Developmental Cell, 41(5), pp. 459–465. Available at: https://doi.org/10.1016/j.devcel.2017.04.021.
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Marin, Ray et al. (2017) ‘Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage’, Genome Research, 27(12), pp. 1974–1987. Available at: https://doi.org/10.1101/gr.223727.117.
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Tschopp, Patrick and Tabin, Clifford J. (2017) ‘Deep homology in the age of next-generation sequencing’, Philosophical Transactions B: Biological Sciences, 372(1713), pp. 1–7. Available at: https://doi.org/10.1098/rstb.2015.0475.
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Tschopp, Patrick (2017) ‘Wie wird der Hals der Giraffe so lang?’, in Füglister, Kurt M.; Hicklin, Martin; Mäser, Pascal (ed.) natura obscura. 200 Naturforschende - 200 Naturphänomene - 200 Jahre Naturforschende Gesellschaft in Basel. Basel: Schwabe (natura obscura. 200 Naturforschende - 200 Naturphänomene - 200 Jahre Naturforschende Gesellschaft in Basel), pp. 205–205.
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