Imaging Core Facility (Biehlmaier)

von Allmen, Robin et al. (2024) ‘Method development and application of object detection and classification to Quaternary fossil pollen sequences’, Quaternary Science Reviews, 327, p. 108521. Available at: https://doi.org/10.1016/j.quascirev.2024.108521.

Schoenenberger, Monica S. et al. (2024) ‘The biophysical and compositional properties of human basement membranes’, FEBS Journal, 291(3), pp. 477–488. Available at: https://doi.org/10.1111/febs.17007.

Zuidscherwoude, Malou et al. (2023) ‘Functional basis for calmodulation of the TRPV5 calcium channel’, The Journal of Physiology, 601(4), pp. 859–878. Available at: https://doi.org/10.1113/jp282952.

Gommers, Lisanne M. M. et al. (2022) ‘Butyrate reduces cellular magnesium absorption independently of metabolic regulation in Caco-2 human colon cells’, Scientific Reports, 12(1). Available at: https://doi.org/10.1038/s41598-022-21683-6.

Roig, Sara Raquel et al. (2022) ‘Oligomerization and Spatial Distribution of Kvβ1.1 and Kvβ2.1 Regulatory Subunits’, Frontiers in Physiology, 13. Available at: https://doi.org/10.3389/fphys.2022.930769.

Lin, Lin et al. (2022) ‘Subcellular localization of Type VI secretion system assembly in response to cell-cell contact’, The EMBO Journal, 41(13), p. e108595. Available at: https://doi.org/10.15252/embj.2021108595.

Lüönd, Fabiana et al. (2022) ‘Tracking and characterization of partial and full epithelial-mesenchymal transition cells in a mouse model of metastatic breast cancer’, STAR Protocols, 3(2), p. 101438. Available at: https://doi.org/10.1016/j.xpro.2022.101438.

Roig, Sara Raquel et al. (2022) ‘S-acylation-dependent membrane microdomain localization of the regulatory Kvβ2.1 subunit’, Cellular and Molecular Life Sciences, 79, p. 230. Available at: https://doi.org/10.1007/s00018-022-04269-3.

Boehm, Ulrike et al. (2021) ‘QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy’, Nature Methods, 18(12), pp. 1423–1426. Available at: https://doi.org/10.1038/s41592-021-01162-y.

Haenel, Quiterie et al. (2021) ‘The maintenance of standing genetic variation: Gene flow vs. selective neutrality in Atlantic stickleback fish’, Molecular ecology, 31(3), pp. 811–821. Available at: https://doi.org/10.1111/mec.16269.

Nelson, Glyn et al. (2021) ‘QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy’, Journal of Microscopy, 284(1), pp. 56–73. Available at: https://doi.org/10.1111/jmi.13041.

Roig, Sara R. et al. (2021) ‘Calmodulin-dependent KCNE4 dimerization controls membrane targeting’, Scientific Reports, 11(1), p. 14046. Available at: https://doi.org/10.1038/s41598-021-93562-5.

Tocchini, Cristina et al. (2021) ‘Translation-dependent mRNA localization to Caenorhabditis elegans adherens junctions’, Development, 148(24), p. 200027. Available at: https://doi.org/10.1242/dev.200027.

Vallejo-Gracia, Albert et al. (2021) ‘KCNE4-dependent functional consequences of Kv1.3-related leukocyte physiology’, Scientific Reports, 11(1), p. 14632. Available at: https://doi.org/10.1038/s41598-021-94015-9.

Agote-Aran, Arantxa et al. (2020) ‘Spatial control of nucleoporin condensation by fragile X-related proteins’, The EMBO Journal, 39(20), p. e104467. Available at: https://doi.org/10.15252/embj.2020104467.

Bouras, Hacene et al. (2020) ‘Metformin regulates TRPM6, a potential explanation for magnesium imbalance in type 2 diabetes patients’, Canadian journal of physiology and pharmacology, 98(6), pp. 400–411. Available at: https://doi.org/10.1139/cjpp-2019-0570.

Dikec, J. et al. (2020) ‘Hyphal network whole field imaging allows for accurate estimation of anastomosis rates and branching dynamics of the filamentous fungus Podospora anserina’, Scientific reports, 10(1), p. 3131. Available at: https://doi.org/10.1038/s41598-020-57808-y.

Donato, Cinzia et al. (2020) ‘Hypoxia Triggers the Intravasation of Clustered Circulating Tumor Cells’, Cell reports, 32(10), p. 108105. Available at: https://doi.org/10.1016/j.celrep.2020.108105.

Gallaud, Emmanuel et al. (2020) ‘Dynamic centriolar localization of Polo and Centrobin in early mitosis primes centrosome asymmetry’, PLoS Biology, 18(8), p. e3000762. Available at: https://doi.org/10.1371/journal.pbio.3000762.

Kaufmann, Tanja et al. (2020) ‘Direct measurement of protein-protein interactions by FLIM-FRET at UV laser-induced DNA damage sites in living cells’, Nucleic Acids Research, 48(21), p. e122. Available at: https://doi.org/10.1093/nar/gkaa859.

Solé, Laura et al. (2020) ‘Functional Consequences of the Variable Stoichiometry of the Kv1.3-KCNE4 Complex’, Cells, 9(5), p. 1128. Available at: https://doi.org/10.3390/cells9051128.

Conic, Sascha et al. (2019) ‘Visualization of Endogenous Transcription Factors in Single Cells Using an Antibody Electroporation-Based Imaging Approach’, Methods in molecular biology (Clifton, N.J.), 2038, pp. 209–221. Available at: https://doi.org/10.1007/978-1-4939-9674-2_14.

Ferrand, Alexia et al. (2019) ‘Using the NoiSee workflow to measure signal-to-noise ratios of confocal microscopes’, Scientific reports, 9(1), p. 1165. Available at: https://doi.org/10.1038/s41598-018-37781-3.

Schermelleh, Lothar et al. (2019) ‘Super-resolution microscopy demystified’, Nature Cell Biology, 21(1), pp. 72–84. Available at: https://doi.org/10.1038/s41556-018-0251-8.

Stahl, Timo et al. (2018) ‘Asymmetric Distribution of Glucose Transporter mRNA Provides Growth Advantage’. bioRxiv. Available at: https://doi.org/10.1101/380279.

Ferrand, Alexia et al. (2018) ‘Using the NoiSee workflow to measure signal-to-noise ratios of confocal microscopes’. bioRxiv. Available at: https://doi.org/10.1101/291500.

Buser, Dominik P. et al. (2018) ‘A versatile nanobody-based toolkit to analyze retrograde transport from the cell surface’, Proceedings of the National Academy of Sciences of the United States of America, 115(27), pp. E6227–E6236. Available at: https://doi.org/10.1073/pnas.1801865115.

Conic, Sascha et al. (2018) ‘Imaging of native transcription factors and histone phosphorylation at high resolution in live cells’, The Journal of cell biology, 217(4), pp. 1537–1552. Available at: https://doi.org/10.1083/jcb.201709153.

Schürmann, Nura et al. (2017) ‘Myeloperoxidase targets oxidative host attacks to Salmonella and prevents collateral tissue damage’, Nature Microbiology, 2(4), p. 16268. Available at: https://doi.org/10.1038/nmicrobiol.2016.268.

Jourdan, Joëlle et al. (2016) ‘Monoclonal antibodies that recognize the alkylation signature of antimalarial ozonides OZ277 (Arterolane) and OZ439 ( Artefenomel)’, ACS infectious diseases, 2(1), pp. 54–61. Available at: https://doi.org/10.1021/acsinfecdis.5b00090.

Tsouroula, Katerina et al. (2016) ‘Temporal and Spatial Uncoupling of DNA Double Strand Break Repair Pathways within Mammalian Heterochromatin’, Molecular Cell, 63(2), pp. 293–305. Available at: https://doi.org/10.1016/j.molcel.2016.06.002.

Ponti, Aaron et al. (2015) ‘Deconvolution of Very Large Data Sets’, Imaging & Microscopy, (2).

Roth, Michaela et al. (2015) ‘Asymmetrically dividing Drosophila neuroblasts utilize two spatially and temporally independent cytokinesis pathways’, Nature communications, 6, p. 6551. Available at: https://doi.org/10.1038/ncomms7551.

Hodel, Corinne et al. (2014) ‘Myosin VIIA is a marker for the cone accessory outer segment in zebrafish’, Anatomical Record, Part A, 297(9), pp. 1777–84. Available at: https://doi.org/10.1002/ar.22976.

Sauteur, Loïc et al. (2014) ‘Cdh5/VE-cadherin Promotes Endothelial Cell Interface Elongation via Cortical Actin Polymerization during Angiogenic Sprouting’, Cell reports, 9(2), pp. 504–13. Available at: https://doi.org/10.1016/j.celrep.2014.09.024.

Nitschké, Maximilian et al. (2012) ‘Differential requirement for ROCK in dendritic cell migration within lymphatic capillaries in steady-state and inflammation’, Blood, 120(11), pp. 2249–58. Available at: https://doi.org/10.1182/blood-2012-03-417923.

Biehlmaier, Oliver and Neuhauss, Stephan C. F. (2012) ‘Behavioral Genetics in Zebrafish to Understand Vertebrate Vision’, in Scott, Jill; Stoeckli, Esther (ed.) Neuromedia: Art and Neuroscience Research. Heidelberg: Springer (Biomedicine), pp. 58–67. Available at: https://doi.org/10.1007/978-3-642-30322-7_3.

Biehlmaier, O., Hehl, J. and Csucs, G. (2011) ‘Acquisition speed comparison of microscope software programs’, Microscopy Research and Technique, 74(6), pp. 539–45. Available at: https://doi.org/10.1002/jemt.20944.

Haug, M. F. et al. (2010) ‘Visual acuity in larval zebrafish: behavior and histology’, Frontiers in Zoology, 7, p. 8. Available at: https://doi.org/10.1186/1742-9994-7-8.

Tschopp, M. et al. (2010) ‘Funduscopy in adult zebrafish and its application to isolate mutant strains with ocular defects’, PLoS ONE, 5(11), p. e15427. Available at: https://doi.org/10.1371/journal.pone.0015427.

Kroger, R. H. H. and Biehlmaier, O. (2009) ‘Space-saving advantage of an inverted retina’, Vision Research, 49(18), pp. 2318–21. Available at: https://doi.org/10.1016/j.visres.2009.07.001.

Kustermann, S. et al. (2008) ‘Survival, excitability, and transfection of retinal neurons in an organotypic culture of mature zebrafish retina’, Cell and Tissue Research, 332(2), pp. 195–209. Available at: https://doi.org/10.1007/s00441-008-0589-5.

Schonthaler, H. B. et al. (2008) ‘The zebrafish mutant lbk/vam6 resembles human multisystemic disorders caused by aberrant trafficking of endosomal vesicles’, Development, 135(2), pp. 387–399. Available at: https://doi.org/10.1242/dev.006098.

Biehlmaier, O., Alam, M. and Schmidt, W. J. (2007) ‘A rat model of Parkinsonism shows depletion of dopamine in the retina’, Neurochemistry International, 50(1), pp. 189–195. Available at: https://doi.org/10.1016/j.neuint.2006.08.001.

Biehlmaier, O., Makhankov, Y. and Neuhauss, S. C. F. (2007) ‘Impaired retinal differentiation and maintenance in zebrafish laminin mutants’, Investigative Ophthalmology & Visual Science, 48(6), pp. 2887–94. Available at: https://doi.org/10.1167/iovs.06-1212.

Schonthaler, H. B. et al. (2007) ‘Evidence for RPE65-independent vision in the cone-dominated zebrafish retina’, European Journal of Neuroscience, 26(7), pp. 1940–9. Available at: https://doi.org/10.1111/j.1460-9568.2007.05801.x.

Bahadori, R. et al. (2006) ‘Nyctalopin is essential for synaptic transmission in the cone dominated zebrafish retina’, European Journal of Neuroscience, 24(6), pp. 1664–74. Available at: https://doi.org/10.1111/j.1460-9568.2006.05053.x.

Bahadori, R. et al. (2006) ‘The Zebrafish fade out mutant: a novel genetic model for Hermansky-Pudlak syndrome’, Investigative Ophthalmology & Visual Science, 47(10), pp. 4523–31. Available at: https://doi.org/10.1167/iovs.05-1596.

Hodel, C., Neuhauss, S. C. F. and Biehlmaier, O. (2006) ‘Time course and development of light adaptation processes in the outer zebrafish retina’, Anatomical Record, Part A, 288(6), pp. 653–62. Available at: https://doi.org/10.1002/ar.a.20329.

Biehlmaier, O. et al. (2005) ‘Photoreceptor morphology is severely affected in the beta,beta-carotene-15,15`-oxygenase (bcox) zebrafish morphant’, European Journal of Neuroscience, 21(1), pp. 59–68. Available at: https://doi.org/10.1111/j.1460-9568.2004.03830.x.

Rinner, O. et al. (2005) ‘Knockdown of cone-specific kinase GRK7 in larval zebrafish leads to impaired cone response recovery and delayed dark adaptation’, Neuron, 47(2), pp. 231–42. Available at: https://doi.org/10.1016/j.neuron.2005.06.010.

Biehlmaier, O., Neuhauss, S. C. F. and Kohler, K. (2003) ‘Double cone dystrophy and RPE degeneration in the retina of the zebrafish gnn mutant’, Investigative Ophthalmology & Visual Science, 44(3), pp. 1287–98. Available at: https://doi.org/10.1167/iovs.02-0363.

Biehlmaier, O., Neuhauss, S. C. F. and Kohler, K. (2003) ‘Synaptic plasticity and functionality at the cone terminal of the developing zebrafish retina’, Journal of Neurobiology, 56(3), pp. 222–36. Available at: https://doi.org/10.1002/neu.10243.

Neuhauss, S. C. F. et al. (2003) ‘Retinal defects in the zebrafish bleached mutant’, Documenta Ophthalmologica, 107(1), pp. 71–8. Available at: https://doi.org/10.1023/a:1024492029629.

Biehlmaier, O., Neuhauss, S. C. and Kohler, K. (2001) ‘Onset and time course of apoptosis in the developing zebrafish retina’, Cell and Tissue Research, 306(2), pp. 199–207. Available at: https://doi.org/10.1007/s004410100447.

Neuhauss, S. C. et al. (1999) ‘Genetic disorders of vision revealed by a behavioral screen of 400 essential loci in zebrafish’, Journal of Neuroscience, 19(19), pp. 8603–15. Available at: http://www.jneurosci.org/content/jneuro/19/19/8603.full.pdf.