Pathogen Evolution (Diard)

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Sobota, M. (2023) <<The>> expression of virulence genes increases membrane permeability and sensitivity to envelope stress in Salmonella Typhimurium.

Bakkeren, Erik et al. (2022) ‘Impact of horizontal gene transfer on emergence and stability of cooperative virulence in Salmonella Typhimurium’, Nature Communications, 13(1), p. 1939. Available at: https://doi.org/10.1038/s41467-022-29597-7.

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Slack, Emma and Diard, Médéric (2022) ‘Resistance is futile? Mucosal immune mechanisms in the context of microbial ecology and evolution’, Mucosal Immunology, 15(6), pp. 1188–1198. Available at: https://doi.org/10.1038/s41385-022-00574-z.

Sobota, Malgorzata et al. (2022) ‘The expression of virulence genes increases membrane permeability and sensitivity to envelope stress in Salmonella Typhimurium’, PLoS Biology, 20(4), p. e3001608. Available at: https://doi.org/10.1371/journal.pbio.3001608.

Bakkeren, Erik et al. (2021) ‘Cooperative virulence can emerge via horizontal gene transfer but is stabilized by transmission’. biorxiv.org. Available at: https://doi.org/10.1101/2021.02.11.430745.

Bakkeren, Erik et al. (2021) ‘Pathogen invasion-dependent tissue reservoirs and plasmid-encoded antibiotic degradation boost plasmid spread in the gut’, eLife, 10, p. e69744. Available at: https://doi.org/10.7554/elife.69744.

Benz, Fabienne et al. (2021) ‘Plasmid- and strain-specific factors drive variation in ESBL-plasmid spread in vitro and in vivo’, The ISME journal, 15(3), pp. 862–878. Available at: https://doi.org/10.1038/s41396-020-00819-4.

Diard, Médéric et al. (2021) ‘A rationally designed oral vaccine induces immunoglobulin A in the murine gut that directs the evolution of attenuated Salmonella variants’, Nature Microbiology, 6(7), pp. 830–841. Available at: https://doi.org/10.1038/s41564-021-00911-1.

Sobota, Malgorzata et al. (2021) ‘The expression of virulence increases outer-membrane permeability and sensitivity to envelope stress in Salmonella Typhimurium’. biorxiv.org. Available at: https://doi.org/10.1101/2021.06.08.447568.

Bakkeren, Erik, Diard, Médéric and Hardt, Wolf-Dietrich (2020) ‘Evolutionary causes and consequences of bacterial antibiotic persistence’, Nature reviews. Microbiology, 18(9), pp. 479–490. Available at: https://doi.org/10.1038/s41579-020-0378-z.

Hausmann, Annika et al. (2020) ‘Intestinal epithelial NAIP/NLRC4 restricts systemic dissemination of the adapted pathogen Salmonella Typhimurium due to site-specific bacterial PAMP expression’, Mucosal Immunology, 13(3), pp. 530–544. Available at: https://doi.org/10.1038/s41385-019-0247-0.

Hoces, Daniel et al. (2020) ‘Growing, evolving and sticking in a flowing environment: understanding IgA interactions with bacteria in the gut’, Immunology, 159(1), pp. 52–62. Available at: https://doi.org/10.1111/imm.13156.

Sangermani, Matteo et al. (2019) ‘Tad pili play a dynamic role in caulobacter crescentus surface colonization’, mBio. 18.06.2019, 10(3). Available at: https://doi.org/10.1128/mBio.01237-19.

Assis, Nadine G. et al. (2019) ‘Identification of Hfq-binding RNAs in Caulobacter crescentus’, RNA Biology, 16, pp. 719–726. Available at: https://doi.org/10.1080/15476286.2019.1593091.

Bakkeren, Erik et al. (2019) ‘Salmonella persisters promote the spread of antibiotic resistance plasmids in the gut’, Nature, 573(7773), pp. 276–280. Available at: https://doi.org/10.1038/s41586-019-1521-8.

Bansept, Florence et al. (2019) ‘Enchained growth and cluster dislocation: A possible mechanism for microbiota homeostasis’, PLoS computational biology, 15(5), p. e1006986. Available at: https://doi.org/10.1371/journal.pcbi.1006986.

Diard, Médéric et al. (2019) ‘Rationally designed oral vaccines can set an evolutionary trap for Salmonella Typhimurium’. bioRxiv. Available at: https://doi.org/10.1101/824821.

Wotzka, Sandra Y. et al. (2019) ‘Escherichia coli limits Salmonella Typhimurium infections after diet shifts and fat-mediated microbiota perturbation in mice’, Nature microbiology, 4(12), pp. 2164–2174. Available at: https://doi.org/10.1038/s41564-019-0568-5.

Diard, Médéric et al. (2017) ‘Inflammation boosts bacteriophage transfer between Salmonella spp’, Science, 355(6330), pp. 1211–1215. Available at: https://doi.org/10.1126/science.aaf8451.

Diard, Médéric and Hardt, Wolf-Dietrich (2017) ‘Basic Processes in Salmonella-Host Interactions: Within-Host Evolution and the Transmission of the Virulent Genotype’, Microbiology Spectrum, 5(5), p. epub. Available at: https://doi.org/10.1128/microbiolspec.mtbp-0012-2016.

Diard, Médéric and Hardt, Wolf-Dietrich (2017) ‘Evolution of bacterial virulence’, FEMS Microbiology Reviews, 41(5), pp. 679–697. Available at: https://doi.org/10.1093/femsre/fux023.

Moor, Kathrin et al. (2017) ‘High-avidity IgA protects the intestine by enchaining growing bacteria’, Nature, 544(7651), pp. 498–502. Available at: https://doi.org/10.1038/nature22058.

Colgan, Aoife M. et al. (2016) ‘The Impact of 18 Ancestral and Horizontally-Acquired Regulatory Proteins upon the Transcriptome and sRNA Landscape of Salmonella enterica serovar Typhimurium’, PLoS genetics, 12(8), p. e1006258. Available at: https://doi.org/10.1371/journal.pgen.1006258.

Curkić, Ismeta et al. (2016) ‘Epitope-Tagged Autotransporters as Single-Cell Reporters for Gene Expression by a Salmonella Typhimurium wbaP Mutant’, PloS one, 11(5), p. e0154828. Available at: https://doi.org/10.1371/journal.pone.0154828.

Moor, Kathrin et al. (2016) ‘Peracetic Acid Treatment Generates Potent Inactivated Oral Vaccines from a Broad Range of Culturable Bacterial Species’, Frontiers in Immunology, 7(34), p. 34. Available at: https://doi.org/10.3389/fimmu.2016.00034.

Maier, Lisa et al. (2015) ‘Correction: Granulocytes Impose a Tight Bottleneck upon the Gut Luminal Pathogen Population during Salmonella Typhimurium Colitis’, PLoS Pathogens, 11(7), p. e1005047. Available at: https://doi.org/10.1371/journal.ppat.1005047.

Arnoldini, Markus et al. (2014) ‘Bistable expression of virulence genes in salmonella leads to the formation of an antibiotic-tolerant subpopulation’, PLoS Biology, 12(8), p. e1001928. Available at: https://doi.org/10.1371/journal.pbio.1001928.

Diard, Médéric et al. (2014) ‘Antibiotic treatment selects for cooperative virulence of Salmonella typhimurium’, Current Biology, 24(17), pp. 2000–2005. Available at: https://doi.org/10.1016/j.cub.2014.07.028.

Maier, Lisa et al. (2014) ‘Granulocytes impose a tight bottleneck upon the gut luminal pathogen population during Salmonella typhimurium colitis’, PLoS Pathogens, 10(12), p. e1004557. Available at: https://doi.org/10.1371/journal.ppat.1004557.

Sellin, Mikael E. et al. (2014) ‘Epithelium-intrinsic NAIP/NLRC4 inflammasome drives infected enterocyte expulsion to restrict Salmonella replication in the intestinal mucosa’, Cell Host & Microbe, 16(2), pp. 237–248. Available at: https://doi.org/10.1016/j.chom.2014.07.001.

Diard, Médéric et al. (2013) ‘Stabilization of cooperative virulence by the expression of an avirulent phenotype’, Nature, 494(7437), pp. 353–356. Available at: https://doi.org/10.1038/nature11913.

Kaiser, Patrick et al. (2012) ‘The streptomycin mouse model for Salmonella diarrhea: functional analysis of the microbiota, the pathogen’s virulence factors, and the host’s mucosal immune response’, Immunological Reviews, 245(1), pp. 56–83. Available at: https://doi.org/10.1111/j.1600-065x.2011.01070.x.

Baeriswyl, Simon et al. (2010) ‘Modulation of aging profiles in isogenic populations of Caenorhabditis elegans by bacteria causing different extrinsic mortality rates’, Biogerontology, 11(1), pp. 53–65. Available at: https://doi.org/10.1007/s10522-009-9228-0.

Diard, Médéric et al. (2010) ‘Pathogenicity-associated islands in extraintestinal pathogenic Escherichia coli are fitness elements involved in intestinal colonization’, Journal of Bacteriology, 192(19), pp. 4885–4893. Available at: https://doi.org/10.1128/jb.00804-10.

Tourret, Jérôme et al. (2010) ‘Effects of single and multiple pathogenicity island deletions on uropathogenic Escherichia coli strain 536 intrinsic extra-intestinal virulence’, International Journal of Medical Microbiology : IJMM, 300(7), pp. 435–439. Available at: https://doi.org/10.1016/j.ijmm.2010.04.013.

Touchon, Marie et al. (2009) ‘Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths’, PLoS Genetics, 5(1), p. e1000344. Available at: https://doi.org/10.1371/journal.pgen.1000344.

Diard, Médéric et al. (2007) ‘Caenorhabditis elegans as a simple model to study phenotypic and genetic virulence determinants of extraintestinal pathogenic Escherichia coli’, Microbes and Infection, 9(2), pp. 214–223. Available at: https://doi.org/10.1016/j.micinf.2006.11.009.