Pathogen Evolution (Diard)

Berdejo, Daniel et al. (2024) ‘Evolutionary trade-off between heat shock resistance, growth at high temperature, and virulence expression in SalmonellaTyphimurium’, mBio, 15(3). Available at: https://doi.org/10.1128/mbio.03105-23.

Cappio Barazzone, Elisa et al. (2024) ‘Diagnosing and engineering gut microbiomes’, EMBO Molecular Medicine, 16, pp. 2660–2677. Available at: https://doi.org/10.1038/s44321-024-00149-4.

Gül, Ersin et al. (2023) ‘The microbiota conditions a gut milieu that selects for wild-type Salmonella Typhimurium virulence’, PLoS Biology, 21(8 August). Available at: https://doi.org/10.1371/journal.pbio.3002253.

Bakkeren, Erik et al. (2022) ‘Impact of horizontal gene transfer on emergence and stability of cooperative virulence in Salmonella Typhimurium’, Nature Communications, 13(1), p. 1939. Available at: https://doi.org/10.1038/s41467-022-29597-7.

Lentsch, Verena et al. (2022) ‘Combined oral vaccination with niche competition can generate sterilizing immunity against entero-pathogenic bacteria’. biorxiv.org. Available at: https://doi.org/10.1101/2022.07.20.498444.

Ramirez Garcia, Alejandro et al. (2022) ‘Pathogenic and Commensal Gut Bacteria Harboring Glycerol/Diol Dehydratase Metabolize Glycerol and Produce DNA-Reactive Acrolein’, Chemical research in toxicology, 35(10), pp. 1840–1850. Available at: https://doi.org/10.1021/acs.chemrestox.2c00137.

Slack, Emma and Diard, Médéric (2022) ‘Resistance is futile? Mucosal immune mechanisms in the context of microbial ecology and evolution’, Mucosal Immunology, 15(6), pp. 1188–1198. Available at: https://doi.org/10.1038/s41385-022-00574-z.

Sobota, Malgorzata et al. (2022) ‘The expression of virulence genes increases membrane permeability and sensitivity to envelope stress in Salmonella Typhimurium’, PLoS Biology, 20(4), p. e3001608. Available at: https://doi.org/10.1371/journal.pbio.3001608.

Bakkeren, Erik et al. (2021) ‘Cooperative virulence can emerge via horizontal gene transfer but is stabilized by transmission’. biorxiv.org. Available at: https://doi.org/10.1101/2021.02.11.430745.

Bakkeren, Erik et al. (2021) ‘Pathogen invasion-dependent tissue reservoirs and plasmid-encoded antibiotic degradation boost plasmid spread in the gut’, eLife, 10, p. e69744. Available at: https://doi.org/10.7554/elife.69744.

Benz, Fabienne et al. (2021) ‘Plasmid- and strain-specific factors drive variation in ESBL-plasmid spread in vitro and in vivo’, The ISME journal, 15(3), pp. 862–878. Available at: https://doi.org/10.1038/s41396-020-00819-4.

Diard, Médéric et al. (2021) ‘A rationally designed oral vaccine induces immunoglobulin A in the murine gut that directs the evolution of attenuated Salmonella variants’, Nature Microbiology, 6(7), pp. 830–841. Available at: https://doi.org/10.1038/s41564-021-00911-1.

Sobota, Malgorzata et al. (2021) ‘The expression of virulence increases outer-membrane permeability and sensitivity to envelope stress in Salmonella Typhimurium’. biorxiv.org. Available at: https://doi.org/10.1101/2021.06.08.447568.

Bakkeren, Erik, Diard, Médéric and Hardt, Wolf-Dietrich (2020) ‘Evolutionary causes and consequences of bacterial antibiotic persistence’, Nature reviews. Microbiology, 18(9), pp. 479–490. Available at: https://doi.org/10.1038/s41579-020-0378-z.

Hausmann, Annika et al. (2020) ‘Intestinal epithelial NAIP/NLRC4 restricts systemic dissemination of the adapted pathogen Salmonella Typhimurium due to site-specific bacterial PAMP expression’, Mucosal Immunology, 13(3), pp. 530–544. Available at: https://doi.org/10.1038/s41385-019-0247-0.

Hoces, Daniel et al. (2020) ‘Growing, evolving and sticking in a flowing environment: understanding IgA interactions with bacteria in the gut’, Immunology, 159(1), pp. 52–62. Available at: https://doi.org/10.1111/imm.13156.

Sangermani, Matteo et al. (2019) ‘Tad pili play a dynamic role in caulobacter crescentus surface colonization’, mBio. 18.06.2019, 10(3). Available at: https://doi.org/10.1128/mBio.01237-19.

Assis, Nadine G. et al. (2019) ‘Identification of Hfq-binding RNAs in Caulobacter crescentus’, RNA Biology, 16, pp. 719–726. Available at: https://doi.org/10.1080/15476286.2019.1593091.

Bakkeren, Erik et al. (2019) ‘Salmonella persisters promote the spread of antibiotic resistance plasmids in the gut’, Nature, 573(7773), pp. 276–280. Available at: https://doi.org/10.1038/s41586-019-1521-8.

Bansept, Florence et al. (2019) ‘Enchained growth and cluster dislocation: A possible mechanism for microbiota homeostasis’, PLoS computational biology, 15(5), p. e1006986. Available at: https://doi.org/10.1371/journal.pcbi.1006986.

Diard, Médéric et al. (2019) ‘Rationally designed oral vaccines can set an evolutionary trap for Salmonella Typhimurium’. bioRxiv. Available at: https://doi.org/10.1101/824821.

Wotzka, Sandra Y. et al. (2019) ‘Escherichia coli limits Salmonella Typhimurium infections after diet shifts and fat-mediated microbiota perturbation in mice’, Nature microbiology, 4(12), pp. 2164–2174. Available at: https://doi.org/10.1038/s41564-019-0568-5.

Diard, Médéric et al. (2017) ‘Inflammation boosts bacteriophage transfer between Salmonella spp’, Science, 355(6330), pp. 1211–1215. Available at: https://doi.org/10.1126/science.aaf8451.

Diard, Médéric and Hardt, Wolf-Dietrich (2017) ‘Basic Processes in Salmonella-Host Interactions: Within-Host Evolution and the Transmission of the Virulent Genotype’, Microbiology Spectrum, 5(5), p. epub. Available at: https://doi.org/10.1128/microbiolspec.mtbp-0012-2016.

Diard, Médéric and Hardt, Wolf-Dietrich (2017) ‘Evolution of bacterial virulence’, FEMS Microbiology Reviews, 41(5), pp. 679–697. Available at: https://doi.org/10.1093/femsre/fux023.

Moor, Kathrin et al. (2017) ‘High-avidity IgA protects the intestine by enchaining growing bacteria’, Nature, 544(7651), pp. 498–502. Available at: https://doi.org/10.1038/nature22058.

Colgan, Aoife M. et al. (2016) ‘The Impact of 18 Ancestral and Horizontally-Acquired Regulatory Proteins upon the Transcriptome and sRNA Landscape of Salmonella enterica serovar Typhimurium’, PLoS genetics, 12(8), p. e1006258. Available at: https://doi.org/10.1371/journal.pgen.1006258.

Curkić, Ismeta et al. (2016) ‘Epitope-Tagged Autotransporters as Single-Cell Reporters for Gene Expression by a Salmonella Typhimurium wbaP Mutant’, PloS one, 11(5), p. e0154828. Available at: https://doi.org/10.1371/journal.pone.0154828.

Moor, Kathrin et al. (2016) ‘Peracetic Acid Treatment Generates Potent Inactivated Oral Vaccines from a Broad Range of Culturable Bacterial Species’, Frontiers in Immunology, 7(34), p. 34. Available at: https://doi.org/10.3389/fimmu.2016.00034.

Maier, Lisa et al. (2015) ‘Correction: Granulocytes Impose a Tight Bottleneck upon the Gut Luminal Pathogen Population during Salmonella Typhimurium Colitis’, PLoS Pathogens, 11(7), p. e1005047. Available at: https://doi.org/10.1371/journal.ppat.1005047.

Arnoldini, Markus et al. (2014) ‘Bistable expression of virulence genes in salmonella leads to the formation of an antibiotic-tolerant subpopulation’, PLoS Biology, 12(8), p. e1001928. Available at: https://doi.org/10.1371/journal.pbio.1001928.

Diard, Médéric et al. (2014) ‘Antibiotic treatment selects for cooperative virulence of Salmonella typhimurium’, Current Biology, 24(17), pp. 2000–2005. Available at: https://doi.org/10.1016/j.cub.2014.07.028.

Maier, Lisa et al. (2014) ‘Granulocytes impose a tight bottleneck upon the gut luminal pathogen population during Salmonella typhimurium colitis’, PLoS Pathogens, 10(12), p. e1004557. Available at: https://doi.org/10.1371/journal.ppat.1004557.

Sellin, Mikael E. et al. (2014) ‘Epithelium-intrinsic NAIP/NLRC4 inflammasome drives infected enterocyte expulsion to restrict Salmonella replication in the intestinal mucosa’, Cell Host & Microbe, 16(2), pp. 237–248. Available at: https://doi.org/10.1016/j.chom.2014.07.001.

Diard, Médéric et al. (2013) ‘Stabilization of cooperative virulence by the expression of an avirulent phenotype’, Nature, 494(7437), pp. 353–356. Available at: https://doi.org/10.1038/nature11913.

Kaiser, Patrick et al. (2012) ‘The streptomycin mouse model for Salmonella diarrhea: functional analysis of the microbiota, the pathogen’s virulence factors, and the host’s mucosal immune response’, Immunological Reviews, 245(1), pp. 56–83. Available at: https://doi.org/10.1111/j.1600-065x.2011.01070.x.

Baeriswyl, Simon et al. (2010) ‘Modulation of aging profiles in isogenic populations of Caenorhabditis elegans by bacteria causing different extrinsic mortality rates’, Biogerontology, 11(1), pp. 53–65. Available at: https://doi.org/10.1007/s10522-009-9228-0.

Diard, Médéric et al. (2010) ‘Pathogenicity-associated islands in extraintestinal pathogenic Escherichia coli are fitness elements involved in intestinal colonization’, Journal of Bacteriology, 192(19), pp. 4885–4893. Available at: https://doi.org/10.1128/jb.00804-10.

Tourret, Jérôme et al. (2010) ‘Effects of single and multiple pathogenicity island deletions on uropathogenic Escherichia coli strain 536 intrinsic extra-intestinal virulence’, International Journal of Medical Microbiology : IJMM, 300(7), pp. 435–439. Available at: https://doi.org/10.1016/j.ijmm.2010.04.013.

Touchon, Marie et al. (2009) ‘Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths’, PLoS Genetics, 5(1), p. e1000344. Available at: https://doi.org/10.1371/journal.pgen.1000344.

Diard, Médéric et al. (2007) ‘Caenorhabditis elegans as a simple model to study phenotypic and genetic virulence determinants of extraintestinal pathogenic Escherichia coli’, Microbes and Infection, 9(2), pp. 214–223. Available at: https://doi.org/10.1016/j.micinf.2006.11.009.