Faculty of Science
Department Biozentrum
Publications
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Marone, R. et al. (2025) ‘Impact of Human Genetic Variation Underlying Resistance to Antigen-Specific Immunotherapy’. Cold Spring Harbor Laboratory. Available at: https://doi.org/10.1101/2025.05.02.651174.
Marone, R. et al. (2025) ‘Impact of Human Genetic Variation Underlying Resistance to Antigen-Specific Immunotherapy’. Cold Spring Harbor Laboratory. Available at: https://doi.org/10.1101/2025.05.02.651174.
Robin, Xavier et al. (2025) ‘Benchmarking of macromolecular complexes with the Continuous Automated Model Evaluation (CAMEO)’, Authorea [Preprint]. Authorea (Authorea). Available at: https://doi.org/10.22541/au.174638718.83117953/v1.
Robin, Xavier et al. (2025) ‘Benchmarking of macromolecular complexes with the Continuous Automated Model Evaluation (CAMEO)’, Authorea [Preprint]. Authorea (Authorea). Available at: https://doi.org/10.22541/au.174638718.83117953/v1.
Laman Trip, Diederik S. et al. (2025) ‘A tissue-specific atlas of protein–protein associations enables prioritization of candidate disease genes’, Nature Biotechnology, p. Online ahead of print. Available at: https://doi.org/10.1038/s41587-025-02659-z.
Laman Trip, Diederik S. et al. (2025) ‘A tissue-specific atlas of protein–protein associations enables prioritization of candidate disease genes’, Nature Biotechnology, p. Online ahead of print. Available at: https://doi.org/10.1038/s41587-025-02659-z.
Furrer, Regula et al. (2025) ‘Metabolic dysregulation contributes to the development of dysferlinopathy’, Life Science Alliance, 8(5), p. e202402991. Available at: https://doi.org/10.26508/lsa.202402991.
Furrer, Regula et al. (2025) ‘Metabolic dysregulation contributes to the development of dysferlinopathy’, Life Science Alliance, 8(5), p. e202402991. Available at: https://doi.org/10.26508/lsa.202402991.
Djermoun, Sarah et al. (2025) ‘Biofilm architecture determines the dissemination of conjugative plasmids’, Proceedings of the National Academy of Sciences, 122(17). Available at: https://doi.org/10.1073/pnas.2417452122.
Djermoun, Sarah et al. (2025) ‘Biofilm architecture determines the dissemination of conjugative plasmids’, Proceedings of the National Academy of Sciences, 122(17). Available at: https://doi.org/10.1073/pnas.2417452122.
Giandomenico, Stefano L et al. (2025) ‘The proteasome maturation factor POMP moonlights as a stress-induced transcriptional regulator’, bioRxiv [Preprint]. Cold Spring Harbor Laboratory (bioRxiv). Available at: https://doi.org/10.1101/2025.04.25.650603.
Giandomenico, Stefano L et al. (2025) ‘The proteasome maturation factor POMP moonlights as a stress-induced transcriptional regulator’, bioRxiv [Preprint]. Cold Spring Harbor Laboratory (bioRxiv). Available at: https://doi.org/10.1101/2025.04.25.650603.
Julou, Thomas et al. (2025) ‘Growth rate controls the sensitivity of gene regulatory circuits’, Science Advances, 11(17). Available at: https://doi.org/10.1126/sciadv.adu9279.
Julou, Thomas et al. (2025) ‘Growth rate controls the sensitivity of gene regulatory circuits’, Science Advances, 11(17). Available at: https://doi.org/10.1126/sciadv.adu9279.
Confavreux, Basile et al. (2025) ‘Balancing complexity, performance and plausibility to meta learn plasticity rules in recurrent spiking networks’, PLOS Computational Biology. Edited by Touboul, Jonathan David, 21(4), p. e1012910. Available at: https://doi.org/10.1371/journal.pcbi.1012910.
Confavreux, Basile et al. (2025) ‘Balancing complexity, performance and plausibility to meta learn plasticity rules in recurrent spiking networks’, PLOS Computational Biology. Edited by Touboul, Jonathan David, 21(4), p. e1012910. Available at: https://doi.org/10.1371/journal.pcbi.1012910.
Sobkowiak, K. et al. (2025) ‘REV7 functions with REV3 as a checkpoint protein delaying mitotic entry until DNA replication is completed’, Cell Reports, 44(4). Available at: https://doi.org/10.1016/j.celrep.2025.115431.
Sobkowiak, K. et al. (2025) ‘REV7 functions with REV3 as a checkpoint protein delaying mitotic entry until DNA replication is completed’, Cell Reports, 44(4). Available at: https://doi.org/10.1016/j.celrep.2025.115431.
Solinger, Jachen A., Ott, Daniel P. and Spang, Anne (2025) ‘ESCRTing the RABs through conversion’, Biochemical Society Transactions, 53(02), pp. 431–445. Available at: https://doi.org/10.1042/bst20253007.
Solinger, Jachen A., Ott, Daniel P. and Spang, Anne (2025) ‘ESCRTing the RABs through conversion’, Biochemical Society Transactions, 53(02), pp. 431–445. Available at: https://doi.org/10.1042/bst20253007.
Arber, Silvia, Falasconi, Antonio and Kanodia, Harsh (2025) ‘Dynamic basal ganglia output signals license and suppress forelimb movements’, Research Square [Preprint]. Research Square Company (Research Square). Available at: https://doi.org/10.21203/rs.3.rs-4676122/v1.
Arber, Silvia, Falasconi, Antonio and Kanodia, Harsh (2025) ‘Dynamic basal ganglia output signals license and suppress forelimb movements’, Research Square [Preprint]. Research Square Company (Research Square). Available at: https://doi.org/10.21203/rs.3.rs-4676122/v1.
Gompper, G. et al. (2025) ‘The 2025 motile active matter roadmap’, Journal of Physics Condensed Matter, 37(14). Available at: https://doi.org/10.1088/1361-648X/adac98.
Gompper, G. et al. (2025) ‘The 2025 motile active matter roadmap’, Journal of Physics Condensed Matter, 37(14). Available at: https://doi.org/10.1088/1361-648X/adac98.
Han, Ji Hoon (2025) Integrative analysis of genetic disorders using NGS, computational approaches and functional assays. Dissertation. University of Basel.
Han, Ji Hoon (2025) Integrative analysis of genetic disorders using NGS, computational approaches and functional assays. Dissertation. University of Basel.
López-Pagán, Nieves et al. (2025) ‘Pseudomonas syringae subpopulations cooperate by coordinating flagellar and type III secretion spatiotemporal dynamics to facilitate plant infection’, Nature Microbiology, 10(4), pp. 958–972. Available at: https://doi.org/10.1038/s41564-025-01966-0.
López-Pagán, Nieves et al. (2025) ‘Pseudomonas syringae subpopulations cooperate by coordinating flagellar and type III secretion spatiotemporal dynamics to facilitate plant infection’, Nature Microbiology, 10(4), pp. 958–972. Available at: https://doi.org/10.1038/s41564-025-01966-0.
Schneider-Heieck, Konstantin et al. (2025) ‘Krüppel-like factor 5 remodels lipid metabolism in exercised skeletal muscle’, Molecular Metabolism, p. Online ahead of print. Available at: https://doi.org/10.1016/j.molmet.2025.102154.
Schneider-Heieck, Konstantin et al. (2025) ‘Krüppel-like factor 5 remodels lipid metabolism in exercised skeletal muscle’, Molecular Metabolism, p. Online ahead of print. Available at: https://doi.org/10.1016/j.molmet.2025.102154.
Träger, Lena et al. (2025) ‘Structural basis for cooperative ssDNA binding by bacteriophage protein filament P12’, Nucleic Acids Research, 53(5). Available at: https://doi.org/10.1093/nar/gkaf132.
Träger, Lena et al. (2025) ‘Structural basis for cooperative ssDNA binding by bacteriophage protein filament P12’, Nucleic Acids Research, 53(5). Available at: https://doi.org/10.1093/nar/gkaf132.
Waltz, Florent et al. (2025) ‘In-cell architecture of the mitochondrial respiratory chain’, Science, 387(6740), pp. 1296–1301. Available at: https://doi.org/10.1126/science.ads8738.
Waltz, Florent et al. (2025) ‘In-cell architecture of the mitochondrial respiratory chain’, Science, 387(6740), pp. 1296–1301. Available at: https://doi.org/10.1126/science.ads8738.
Furrer, Regula and Handschin, Christoph (2025) ‘Biomarkers of aging: from molecules and surrogates to physiology and function’, Physiological Reviews, 105(3), pp. 1609–1694. Available at: https://doi.org/10.1152/physrev.00045.2024.
Furrer, Regula and Handschin, Christoph (2025) ‘Biomarkers of aging: from molecules and surrogates to physiology and function’, Physiological Reviews, 105(3), pp. 1609–1694. Available at: https://doi.org/10.1152/physrev.00045.2024.
Heuberger, Lukas et al. (2025) ‘Polymeric Giant Unilamellar Vesicles Support Longevity of Native Nuclei in Protocells’, Small Science. 18.03.2025, p. Online ahead of print. Available at: https://doi.org/10.1002/smsc.202400622.
Heuberger, Lukas et al. (2025) ‘Polymeric Giant Unilamellar Vesicles Support Longevity of Native Nuclei in Protocells’, Small Science. 18.03.2025, p. Online ahead of print. Available at: https://doi.org/10.1002/smsc.202400622.
Yuping, Li et al. (2025) ‘Jumbo phage killer immune system targets early infection of nucleus-forming phages’, Cell, p. Online ahead of print. Available at: https://doi.org/10.1016/j.cell.2025.02.016.
Yuping, Li et al. (2025) ‘Jumbo phage killer immune system targets early infection of nucleus-forming phages’, Cell, p. Online ahead of print. Available at: https://doi.org/10.1016/j.cell.2025.02.016.
McGowan, Timothy J. et al. (2025) ‘AAV capsids target muscle resident cells with different efficiencies - a comparative study between AAV8, AAVMYO and AAVMYO2’, Molecular Therapy: Methods & Clinical Development, 33(2). Available at: https://doi.org/10.1016/j.omtm.2025.101451.
McGowan, Timothy J. et al. (2025) ‘AAV capsids target muscle resident cells with different efficiencies - a comparative study between AAV8, AAVMYO and AAVMYO2’, Molecular Therapy: Methods & Clinical Development, 33(2). Available at: https://doi.org/10.1016/j.omtm.2025.101451.
Taggi, Valerio et al. (2025) ‘Targeted and Untargeted Proteomics-based Comparison of Adenoviral Infected hCMEC/D3 and hBMEC as a Human Brain Endothelial Cells to Study the OATP2B1 Transporter’, Molecular Neurobiology, p. Online ahead of print. Available at: https://doi.org/10.1007/s12035-025-04807-7.
Taggi, Valerio et al. (2025) ‘Targeted and Untargeted Proteomics-based Comparison of Adenoviral Infected hCMEC/D3 and hBMEC as a Human Brain Endothelial Cells to Study the OATP2B1 Transporter’, Molecular Neurobiology, p. Online ahead of print. Available at: https://doi.org/10.1007/s12035-025-04807-7.
Podlaski, William F., Agnes, Everton J. and Vogels, Tim P. (2025) ‘High Capacity and Dynamic Accessibility in Associative Memory Networks with Context-Dependent Neuronal and Synaptic Gating’, Physical Review X, 15(1), p. 011057. Available at: https://doi.org/10.1103/PhysRevX.15.011057.
Podlaski, William F., Agnes, Everton J. and Vogels, Tim P. (2025) ‘High Capacity and Dynamic Accessibility in Associative Memory Networks with Context-Dependent Neuronal and Synaptic Gating’, Physical Review X, 15(1), p. 011057. Available at: https://doi.org/10.1103/PhysRevX.15.011057.
Molodenskiy, Dmitry et al. (2025) ‘AlphaPulldown2 – a general pipeline for high-throughput structural modeling’, Bioinformatics, 41(3). Available at: https://doi.org/10.1093/bioinformatics/btaf115.
Molodenskiy, Dmitry et al. (2025) ‘AlphaPulldown2 – a general pipeline for high-throughput structural modeling’, Bioinformatics, 41(3). Available at: https://doi.org/10.1093/bioinformatics/btaf115.
Tavano, Stefania et al. (2025) ‘BMP-dependent patterning of ectoderm tissue material properties modulates lateral mesendoderm cell migration during early zebrafish gastrulation’, Cell Reports, 44(3). Available at: https://doi.org/10.1016/j.celrep.2025.115387.
Tavano, Stefania et al. (2025) ‘BMP-dependent patterning of ectoderm tissue material properties modulates lateral mesendoderm cell migration during early zebrafish gastrulation’, Cell Reports, 44(3). Available at: https://doi.org/10.1016/j.celrep.2025.115387.
Brüderlin, Mitchell et al. (2025) ‘Pseudomonas aeruginosa assembles H1-T6SS in response to physical and chemical damage of the outer membrane’, Science Advances , 11(10). Available at: https://doi.org/10.1126/sciadv.adr1713.
Brüderlin, Mitchell et al. (2025) ‘Pseudomonas aeruginosa assembles H1-T6SS in response to physical and chemical damage of the outer membrane’, Science Advances , 11(10). Available at: https://doi.org/10.1126/sciadv.adr1713.
Ham, Alexander S. et al. (2025) ‘Single-nuclei sequencing of skeletal muscle reveals subsynaptic-specific transcripts involved in neuromuscular junction maintenance’, Nature Communications, 16(1). Available at: https://doi.org/10.1038/s41467-025-57487-1.
Ham, Alexander S. et al. (2025) ‘Single-nuclei sequencing of skeletal muscle reveals subsynaptic-specific transcripts involved in neuromuscular junction maintenance’, Nature Communications, 16(1). Available at: https://doi.org/10.1038/s41467-025-57487-1.
Furrer, Regula and Handschin, Christoph (2025) ‘Biomarkers of aging: functional aspects still trump molecular parameters’, npj Aging, 11(1). Available at: https://doi.org/10.1038/s41514-025-00207-2.
Furrer, Regula and Handschin, Christoph (2025) ‘Biomarkers of aging: functional aspects still trump molecular parameters’, npj Aging, 11(1). Available at: https://doi.org/10.1038/s41514-025-00207-2.
Lubrano, P. et al. (2025) ‘Metabolic mutations reduce antibiotic susceptibility of E. coli by pathway-specific bottlenecks’, Molecular Systems Biology , 21(3), pp. 274–293. Available at: https://doi.org/10.1038/s44320-024-00084-z.
Lubrano, P. et al. (2025) ‘Metabolic mutations reduce antibiotic susceptibility of E. coli by pathway-specific bottlenecks’, Molecular Systems Biology , 21(3), pp. 274–293. Available at: https://doi.org/10.1038/s44320-024-00084-z.
Alberto, Anthea et al. (2025) ‘Management of Digital Research Data at the End of a Project’. Available at: https://doi.org/10.5281/ZENODO.14925912.
Alberto, Anthea et al. (2025) ‘Management of Digital Research Data at the End of a Project’. Available at: https://doi.org/10.5281/ZENODO.14925912.
Jia, Shichao (2025) Ultrasonic sample handling by acoustic radiation force: applications in acoustic levitation and acoustic tweezing. Doctoral Thesis. University of Basel.
Jia, Shichao (2025) Ultrasonic sample handling by acoustic radiation force: applications in acoustic levitation and acoustic tweezing. Doctoral Thesis. University of Basel.
Lehr, S. et al. (2025) ‘Self-organized pattern formation in the developing mouse neural tube by a temporal relay of BMP signaling’, Developmental Cell, 60(4), pp. 567–580.e14. Available at: https://doi.org/10.1016/j.devcel.2024.10.024.
Lehr, S. et al. (2025) ‘Self-organized pattern formation in the developing mouse neural tube by a temporal relay of BMP signaling’, Developmental Cell, 60(4), pp. 567–580.e14. Available at: https://doi.org/10.1016/j.devcel.2024.10.024.
Henderson, Alyssa et al. (2025) ‘Disentangling the feedback loops driving spatial patterning in microbial communities’, npj Biofilms and Microbiomes, 11(1). Available at: https://doi.org/10.1038/s41522-025-00666-1.
Henderson, Alyssa et al. (2025) ‘Disentangling the feedback loops driving spatial patterning in microbial communities’, npj Biofilms and Microbiomes, 11(1). Available at: https://doi.org/10.1038/s41522-025-00666-1.
Balajti, Máté et al. (2025) ‘HTSinfer: Inferring metadata from bulk Illumina RNA-Seq libraries’, Bioinformatics, 41(3). Available at: https://doi.org/10.1093/bioinformatics/btaf076.
Balajti, Máté et al. (2025) ‘HTSinfer: Inferring metadata from bulk Illumina RNA-Seq libraries’, Bioinformatics, 41(3). Available at: https://doi.org/10.1093/bioinformatics/btaf076.
Schwede, Torsten et al. (2025) ‘Comparing macromolecular complexes - a fully automated benchmarking suite’, Research Square [Preprint]. Springer Science and Business Media LLC (Research Square). Available at: https://doi.org/10.21203/rs.3.rs-5920881/v1.
Schwede, Torsten et al. (2025) ‘Comparing macromolecular complexes - a fully automated benchmarking suite’, Research Square [Preprint]. Springer Science and Business Media LLC (Research Square). Available at: https://doi.org/10.21203/rs.3.rs-5920881/v1.
Pal, Jagriti et al. (2025) ‘Nonstop mutations cause loss of renal tumor suppressor proteins VHL and BAP1 and affect multiple stages of protein translation’, Science Advances, 11(7). Available at: https://doi.org/10.1126/sciadv.adr6375.
Pal, Jagriti et al. (2025) ‘Nonstop mutations cause loss of renal tumor suppressor proteins VHL and BAP1 and affect multiple stages of protein translation’, Science Advances, 11(7). Available at: https://doi.org/10.1126/sciadv.adr6375.
Ruiz, Alexis et al. (2025) ‘5-aza-2-deoxycytidine improves skeletal muscle function in a mouse model for recessive RYR1-related congenital myopathy’, Human Molecular Genetics, 34(9), pp. 790–805. Available at: https://doi.org/10.1093/hmg/ddaf021.
Ruiz, Alexis et al. (2025) ‘5-aza-2-deoxycytidine improves skeletal muscle function in a mouse model for recessive RYR1-related congenital myopathy’, Human Molecular Genetics, 34(9), pp. 790–805. Available at: https://doi.org/10.1093/hmg/ddaf021.
Tintignac, Lionel et al. (2025) ‘Identification of new interactors of eIF3f by endogenous proximity-dependent biotin labelling in human muscle cells’, bioRxiv [Preprint]. Cold Spring Harbor Laboratory (bioRxiv). Available at: https://doi.org/10.1101/2025.02.10.636994.
Tintignac, Lionel et al. (2025) ‘Identification of new interactors of eIF3f by endogenous proximity-dependent biotin labelling in human muscle cells’, bioRxiv [Preprint]. Cold Spring Harbor Laboratory (bioRxiv). Available at: https://doi.org/10.1101/2025.02.10.636994.
Škrinjar, Peter et al. (2025) ‘Have protein-ligand co-folding methods moved beyond memorisation?’, bioRxiv [Preprint]. Cold Spring Harbor Laboratory (bioRxiv). Available at: https://doi.org/10.1101/2025.02.03.636309.
Škrinjar, Peter et al. (2025) ‘Have protein-ligand co-folding methods moved beyond memorisation?’, bioRxiv [Preprint]. Cold Spring Harbor Laboratory (bioRxiv). Available at: https://doi.org/10.1101/2025.02.03.636309.
Fanous, Joseph et al. (2025) ‘Limited impact of Salmonella stress and persisters on antibiotic clearance’, Nature, 639, pp. 181–189. Available at: https://doi.org/10.1038/s41586-024-08506-6.
Fanous, Joseph et al. (2025) ‘Limited impact of Salmonella stress and persisters on antibiotic clearance’, Nature, 639, pp. 181–189. Available at: https://doi.org/10.1038/s41586-024-08506-6.
Humolli, Dorentina et al. (2025) ‘Completing the BASEL phage collection to unlock hidden diversity for systematic exploration of phage-host interactions’, bioRxiv [Preprint]. Cold Spring Harbor Laboratory (bioRxiv ). Available at: https://doi.org/10.1101/2024.09.12.612763.
Humolli, Dorentina et al. (2025) ‘Completing the BASEL phage collection to unlock hidden diversity for systematic exploration of phage-host interactions’, bioRxiv [Preprint]. Cold Spring Harbor Laboratory (bioRxiv ). Available at: https://doi.org/10.1101/2024.09.12.612763.
Ott, Daniel P et al. (2025) ‘Coordination between ESCRT function and Rab conversion during endosome maturation’, The EMBO Journal, p. Online ahead of print. Available at: https://doi.org/10.1038/s44318-025-00367-7.
Ott, Daniel P et al. (2025) ‘Coordination between ESCRT function and Rab conversion during endosome maturation’, The EMBO Journal, p. Online ahead of print. Available at: https://doi.org/10.1038/s44318-025-00367-7.
Erdmann, Joana et al. (2025) ‘Amoxicillin Concentrations in Samples of Musculoskeletal Infections’, Helvetica Chimica Acta, 108. Available at: https://doi.org/10.1002/hlca.202400178.
Erdmann, Joana et al. (2025) ‘Amoxicillin Concentrations in Samples of Musculoskeletal Infections’, Helvetica Chimica Acta, 108. Available at: https://doi.org/10.1002/hlca.202400178.
Seelig, Joachim and Seelig, Anna (2025) ‘Pressure Protein Denaturation Compared to Thermal and Chemical Unfolding: Analyses with Cooperative Models’, The Journal of Physical Chemistry B, 129(4), pp. 1229–1236. Available at: https://doi.org/10.1021/acs.jpcb.4c07703.
Seelig, Joachim and Seelig, Anna (2025) ‘Pressure Protein Denaturation Compared to Thermal and Chemical Unfolding: Analyses with Cooperative Models’, The Journal of Physical Chemistry B, 129(4), pp. 1229–1236. Available at: https://doi.org/10.1021/acs.jpcb.4c07703.
Gómez-Cabrera, Maria Carmen and Handschin, Christoph (2025) ‘Special Issue: ‘Unlocking Athletic Potential: Exploring Exercise Physiology from Mechanisms to Performance’’, Free Radical Biology and Medicine, 230, pp. 48–49. Available at: https://doi.org/10.1016/j.freeradbiomed.2025.01.036.
Gómez-Cabrera, Maria Carmen and Handschin, Christoph (2025) ‘Special Issue: ‘Unlocking Athletic Potential: Exploring Exercise Physiology from Mechanisms to Performance’’, Free Radical Biology and Medicine, 230, pp. 48–49. Available at: https://doi.org/10.1016/j.freeradbiomed.2025.01.036.
Ndinyanka Fabrice, Tohnyui et al. (2025) ‘T cell population size control by coronin 1 uncovered: from a spot identified by two-dimensional gel electrophoresis to quantitative proteomics’, Expert Review of Proteomics, 22(1), pp. 35–44. Available at: https://doi.org/10.1080/14789450.2025.2450812.
Ndinyanka Fabrice, Tohnyui et al. (2025) ‘T cell population size control by coronin 1 uncovered: from a spot identified by two-dimensional gel electrophoresis to quantitative proteomics’, Expert Review of Proteomics, 22(1), pp. 35–44. Available at: https://doi.org/10.1080/14789450.2025.2450812.
Espinoza Miranda, Suyen Solange et al. (2025) ‘Resolving spatiotemporal dynamics in bacterial multicellular populations: approaches and challenges’, Microbiology and Molecular Biology Reviews, 89(1). Available at: https://doi.org/10.1128/mmbr.00138-24.
Espinoza Miranda, Suyen Solange et al. (2025) ‘Resolving spatiotemporal dynamics in bacterial multicellular populations: approaches and challenges’, Microbiology and Molecular Biology Reviews, 89(1). Available at: https://doi.org/10.1128/mmbr.00138-24.
Tejada-Arranz, Alejandro et al. (2025) ‘Mechanisms of Pseudomonas aeruginosa resistance to Type VI Secretion System attacks’, bioRxiv [Preprint]. Cold Spring Harbor Laboratory (bioRxiv). Available at: https://doi.org/10.1101/2024.10.26.620397.
Tejada-Arranz, Alejandro et al. (2025) ‘Mechanisms of Pseudomonas aeruginosa resistance to Type VI Secretion System attacks’, bioRxiv [Preprint]. Cold Spring Harbor Laboratory (bioRxiv). Available at: https://doi.org/10.1101/2024.10.26.620397.
Marinucci, Mattia (2025) Molecular and Metabolic Dynamics in Cancer: Therapeutic Insights for Metastatic Colorectal Cancer and Hepatocellular Carcinoma. Doctoral Thesis. University of Basel.
Marinucci, Mattia (2025) Molecular and Metabolic Dynamics in Cancer: Therapeutic Insights for Metastatic Colorectal Cancer and Hepatocellular Carcinoma. Doctoral Thesis. University of Basel.
Schwayer, C. et al. (2025) ‘Cell heterogeneity and fate bistability drive tissue patterning during intestinal regeneration’, bioRxiv [Preprint]. Cold Spring Harbor Laboratory (bioRxiv). Available at: https://doi.org/10.1101/2025.01.14.632683.
Schwayer, C. et al. (2025) ‘Cell heterogeneity and fate bistability drive tissue patterning during intestinal regeneration’, bioRxiv [Preprint]. Cold Spring Harbor Laboratory (bioRxiv). Available at: https://doi.org/10.1101/2025.01.14.632683.
Smith, William P. J. et al. (2025) ‘Multiplicity of type 6 secretion system toxins limits the evolution of resistance’, Proceedings of the National Academy of Sciences, 122(2). Available at: https://doi.org/10.1073/pnas.2416700122.
Smith, William P. J. et al. (2025) ‘Multiplicity of type 6 secretion system toxins limits the evolution of resistance’, Proceedings of the National Academy of Sciences, 122(2). Available at: https://doi.org/10.1073/pnas.2416700122.
Giulia Di Bartolomei et al. (2025) ‘Dilated cardiomyopathy-associated RNA Binding Motif Protein 20 regulates long pre-mRNAs in neurons’, eLife [Preprint]. (eLife). Available at: https://doi.org/10.7554/eLife.104808.1.
Giulia Di Bartolomei et al. (2025) ‘Dilated cardiomyopathy-associated RNA Binding Motif Protein 20 regulates long pre-mRNAs in neurons’, eLife [Preprint]. (eLife). Available at: https://doi.org/10.7554/eLife.104808.1.
Moon, Youngbin et al. (2025) ‘PolyASite v3.0: a multi-species atlas of polyadenylation sites inferred from single-cell RNA-sequencing data’, Nucleic Acids Research. 12.11.2024, 53(D1), pp. D197–D204. Available at: https://doi.org/10.1093/nar/gkae1043.
Moon, Youngbin et al. (2025) ‘PolyASite v3.0: a multi-species atlas of polyadenylation sites inferred from single-cell RNA-sequencing data’, Nucleic Acids Research. 12.11.2024, 53(D1), pp. D197–D204. Available at: https://doi.org/10.1093/nar/gkae1043.
Alter, Claudio Luca et al. (2025) ‘Nano Plasma Membrane Vesicle-Lipid Nanoparticle Hybrids for Enhanced Gene Delivery and Expression’, Advanced Healthcare Materials. 10.11.2024, 14(1). Available at: https://doi.org/10.1002/adhm.202401888.
Alter, Claudio Luca et al. (2025) ‘Nano Plasma Membrane Vesicle-Lipid Nanoparticle Hybrids for Enhanced Gene Delivery and Expression’, Advanced Healthcare Materials. 10.11.2024, 14(1). Available at: https://doi.org/10.1002/adhm.202401888.
Bayer, Emily A et al. (2025) ‘The mechanosensory DEG/ENaC channel DEGT-1 is a proprioceptor of C. elegans foregut movement’, bioRxiv [Preprint]. bioRxiv: Cold Spring Harbor Laboratory (bioRxiv). Available at: https://doi.org/10.1101/2025.01.01.631014.
Bayer, Emily A et al. (2025) ‘The mechanosensory DEG/ENaC channel DEGT-1 is a proprioceptor of C. elegans foregut movement’, bioRxiv [Preprint]. bioRxiv: Cold Spring Harbor Laboratory (bioRxiv). Available at: https://doi.org/10.1101/2025.01.01.631014.
Agustoni, E. (2025) Molecular mechanisms of hybrid proteins in bacterial signal transduction. Doctoral Thesis.
Agustoni, E. (2025) Molecular mechanisms of hybrid proteins in bacterial signal transduction. Doctoral Thesis.
Alaball Pujol, M.-E. (2025) Quantifying bacterial responses to antibiotics at the single-cell level. Doctoral Thesis.
Alaball Pujol, M.-E. (2025) Quantifying bacterial responses to antibiotics at the single-cell level. Doctoral Thesis.
Battaglioni, S. (2025) Exploring the landscape of mTOR substrates: identification of two novel targets. Doctoral Thesis.
Battaglioni, S. (2025) Exploring the landscape of mTOR substrates: identification of two novel targets. Doctoral Thesis.
Chaaban, M. (2025) Modulation of human adipose derived stromal cell chondrogenesis for controlled endochondral ossification and efficient bone formation. Doctoral Thesis.
Chaaban, M. (2025) Modulation of human adipose derived stromal cell chondrogenesis for controlled endochondral ossification and efficient bone formation. Doctoral Thesis.
Garaudé, S. (2025) Engineering an antibody-discernible and functional CD45 variant on hematopoietic stem and progenitor cells via base editing. Doctoral Thesis.
Garaudé, S. (2025) Engineering an antibody-discernible and functional CD45 variant on hematopoietic stem and progenitor cells via base editing. Doctoral Thesis.
Heynisch, A.C.-F. (2025) Protein engineering to modulate dynamics of molecular machines. Doctoral Thesis.
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Kolesnikov, M. (2025) Defining the molecular basis of dynamic localization of type VI secretion system assembly in ‘Pseudomonas aeruginosa’. Doctoral Thesis.
Kolesnikov, M. (2025) Defining the molecular basis of dynamic localization of type VI secretion system assembly in ‘Pseudomonas aeruginosa’. Doctoral Thesis.
Kveim, V.A. (2025) Dissecting the contribution of developmentally-defined neuronal subpopulations to memory functions in the mouse hippocampus. Doctoral Thesis.
Kveim, V.A. (2025) Dissecting the contribution of developmentally-defined neuronal subpopulations to memory functions in the mouse hippocampus. Doctoral Thesis.
Molari, Marco, Shaw, Liam P. and Neher, Richard A. (2025) ‘Quantifying the Evolutionary Dynamics of Structure and Content in Closely Related E. coli Genomes’, Molecular Biology and Evolution, 42(1). Available at: https://doi.org/10.1093/molbev/msae272.
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Yogesh, B. (2025) Neuromodulation of cortex: modulatory signals,
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Yogesh, B. (2025) Neuromodulation of cortex: modulatory signals,
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