Imaging Core Facility (Biehlmaier)

Heusermann, Wolf et al. (2024) ‘Tissue clearing of mouse organs and zebrafish using CUBIC L / CUBIC HL and CUBIC RA reagents v1’. Springer Science and Business Media LLC. Available at: https://doi.org/10.17504/protocols.io.yxmvm9kr5l3p/v1.

von Allmen, Robin et al. (2024) ‘Method development and application of object detection and classification to Quaternary fossil pollen sequences’, Quaternary Science Reviews, 327, p. 108521. Available at: https://doi.org/10.1016/j.quascirev.2024.108521.

Schoenenberger, Monica S. et al. (2024) ‘The biophysical and compositional properties of human basement membranes’, FEBS Journal, 291(3), pp. 477–488. Available at: https://doi.org/10.1111/febs.17007.

Zuidscherwoude, Malou et al. (2023) ‘Functional basis for calmodulation of the TRPV5 calcium channel’, The Journal of Physiology, 601(4), pp. 859–878. Available at: https://doi.org/10.1113/jp282952.

Lacagnina, Carlo et al. (2023) TOWARDS A DATA QUALITY FRAMEWORK FOR EOSC. zenodo.org: Biozentrum, UNiversity of Basel. Available at: https://doi.org/10.5281/zenodo.7515816.

Gommers, Lisanne M. M. et al. (2022) ‘Butyrate reduces cellular magnesium absorption independently of metabolic regulation in Caco-2 human colon cells’, Scientific Reports, 12(1). Available at: https://doi.org/10.1038/s41598-022-21683-6.

Roig, Sara Raquel et al. (2022) ‘Oligomerization and Spatial Distribution of Kvβ1.1 and Kvβ2.1 Regulatory Subunits’, Frontiers in Physiology, 13. Available at: https://doi.org/10.3389/fphys.2022.930769.

Lin, Lin et al. (2022) ‘Subcellular localization of Type VI secretion system assembly in response to cell-cell contact’, The EMBO Journal, 41(13), p. e108595. Available at: https://doi.org/10.15252/embj.2021108595.

Lüönd, Fabiana et al. (2022) ‘Tracking and characterization of partial and full epithelial-mesenchymal transition cells in a mouse model of metastatic breast cancer’, STAR Protocols, 3(2), p. 101438. Available at: https://doi.org/10.1016/j.xpro.2022.101438.

Roig, Sara Raquel et al. (2022) ‘S-acylation-dependent membrane microdomain localization of the regulatory Kvβ2.1 subunit’, Cellular and Molecular Life Sciences, 79, p. 230. Available at: https://doi.org/10.1007/s00018-022-04269-3.

Boehm, Ulrike et al. (2021) ‘QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy’, Nature Methods, 18(12), pp. 1423–1426. Available at: https://doi.org/10.1038/s41592-021-01162-y.

Haenel, Quiterie et al. (2021) ‘The maintenance of standing genetic variation: Gene flow vs. selective neutrality in Atlantic stickleback fish’, Molecular ecology, 31(3), pp. 811–821. Available at: https://doi.org/10.1111/mec.16269.

Nelson, Glyn et al. (2021) ‘QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy’, Journal of Microscopy, 284(1), pp. 56–73. Available at: https://doi.org/10.1111/jmi.13041.

Roig, Sara R. et al. (2021) ‘Calmodulin-dependent KCNE4 dimerization controls membrane targeting’, Scientific Reports, 11(1), p. 14046. Available at: https://doi.org/10.1038/s41598-021-93562-5.

Tocchini, Cristina et al. (2021) ‘Translation-dependent mRNA localization to Caenorhabditis elegans adherens junctions’, Development, 148(24), p. 200027. Available at: https://doi.org/10.1242/dev.200027.

Vallejo-Gracia, Albert et al. (2021) ‘KCNE4-dependent functional consequences of Kv1.3-related leukocyte physiology’, Scientific Reports, 11(1), p. 14632. Available at: https://doi.org/10.1038/s41598-021-94015-9.

Agote-Aran, Arantxa et al. (2020) ‘Spatial control of nucleoporin condensation by fragile X-related proteins’, The EMBO Journal, 39(20), p. e104467. Available at: https://doi.org/10.15252/embj.2020104467.

Bouras, Hacene et al. (2020) ‘Metformin regulates TRPM6, a potential explanation for magnesium imbalance in type 2 diabetes patients’, Canadian journal of physiology and pharmacology, 98(6), pp. 400–411. Available at: https://doi.org/10.1139/cjpp-2019-0570.

Dikec, J. et al. (2020) ‘Hyphal network whole field imaging allows for accurate estimation of anastomosis rates and branching dynamics of the filamentous fungus Podospora anserina’, Scientific reports, 10(1), p. 3131. Available at: https://doi.org/10.1038/s41598-020-57808-y.

Donato, Cinzia et al. (2020) ‘Hypoxia Triggers the Intravasation of Clustered Circulating Tumor Cells’, Cell reports, 32(10), p. 108105. Available at: https://doi.org/10.1016/j.celrep.2020.108105.

Gallaud, Emmanuel et al. (2020) ‘Dynamic centriolar localization of Polo and Centrobin in early mitosis primes centrosome asymmetry’, PLoS Biology, 18(8), p. e3000762. Available at: https://doi.org/10.1371/journal.pbio.3000762.

Kaufmann, Tanja et al. (2020) ‘Direct measurement of protein-protein interactions by FLIM-FRET at UV laser-induced DNA damage sites in living cells’, Nucleic Acids Research, 48(21), p. e122. Available at: https://doi.org/10.1093/nar/gkaa859.

Solé, Laura et al. (2020) ‘Functional Consequences of the Variable Stoichiometry of the Kv1.3-KCNE4 Complex’, Cells, 9(5), p. 1128. Available at: https://doi.org/10.3390/cells9051128.

Conic, Sascha et al. (2019) ‘Visualization of Endogenous Transcription Factors in Single Cells Using an Antibody Electroporation-Based Imaging Approach’, Methods in molecular biology (Clifton, N.J.), 2038, pp. 209–221. Available at: https://doi.org/10.1007/978-1-4939-9674-2_14.

Ferrand, Alexia et al. (2019) ‘Using the NoiSee workflow to measure signal-to-noise ratios of confocal microscopes’, Scientific reports, 9(1), p. 1165. Available at: https://doi.org/10.1038/s41598-018-37781-3.

Schermelleh, Lothar et al. (2019) ‘Super-resolution microscopy demystified’, Nature Cell Biology, 21(1), pp. 72–84. Available at: https://doi.org/10.1038/s41556-018-0251-8.

Stahl, Timo et al. (2018) ‘Asymmetric Distribution of Glucose Transporter mRNA Provides Growth Advantage’. bioRxiv. Available at: https://doi.org/10.1101/380279.

Ferrand, Alexia et al. (2018) ‘Using the NoiSee workflow to measure signal-to-noise ratios of confocal microscopes’. bioRxiv. Available at: https://doi.org/10.1101/291500.

Buser, Dominik P. et al. (2018) ‘A versatile nanobody-based toolkit to analyze retrograde transport from the cell surface’, Proceedings of the National Academy of Sciences of the United States of America, 115(27), pp. E6227–E6236. Available at: https://doi.org/10.1073/pnas.1801865115.

Conic, Sascha et al. (2018) ‘Imaging of native transcription factors and histone phosphorylation at high resolution in live cells’, The Journal of cell biology, 217(4), pp. 1537–1552. Available at: https://doi.org/10.1083/jcb.201709153.

Schürmann, Nura et al. (2017) ‘Myeloperoxidase targets oxidative host attacks to Salmonella and prevents collateral tissue damage’, Nature Microbiology, 2(4), p. 16268. Available at: https://doi.org/10.1038/nmicrobiol.2016.268.

Jourdan, Joëlle et al. (2016) ‘Monoclonal antibodies that recognize the alkylation signature of antimalarial ozonides OZ277 (Arterolane) and OZ439 ( Artefenomel)’, ACS infectious diseases, 2(1), pp. 54–61. Available at: https://doi.org/10.1021/acsinfecdis.5b00090.

Tsouroula, Katerina et al. (2016) ‘Temporal and Spatial Uncoupling of DNA Double Strand Break Repair Pathways within Mammalian Heterochromatin’, Molecular Cell, 63(2), pp. 293–305. Available at: https://doi.org/10.1016/j.molcel.2016.06.002.

Ponti, Aaron et al. (2015) ‘Deconvolution of Very Large Data Sets’, Imaging & Microscopy, (2).

Roth, Michaela et al. (2015) ‘Asymmetrically dividing Drosophila neuroblasts utilize two spatially and temporally independent cytokinesis pathways’, Nature communications, 6, p. 6551. Available at: https://doi.org/10.1038/ncomms7551.

Hodel, Corinne et al. (2014) ‘Myosin VIIA is a marker for the cone accessory outer segment in zebrafish’, Anatomical Record, Part A, 297(9), pp. 1777–84. Available at: https://doi.org/10.1002/ar.22976.

Sauteur, Loïc et al. (2014) ‘Cdh5/VE-cadherin Promotes Endothelial Cell Interface Elongation via Cortical Actin Polymerization during Angiogenic Sprouting’, Cell reports, 9(2), pp. 504–13. Available at: https://doi.org/10.1016/j.celrep.2014.09.024.

Nitschké, Maximilian et al. (2012) ‘Differential requirement for ROCK in dendritic cell migration within lymphatic capillaries in steady-state and inflammation’, Blood, 120(11), pp. 2249–58. Available at: https://doi.org/10.1182/blood-2012-03-417923.

Biehlmaier, Oliver and Neuhauss, Stephan C. F. (2012) ‘Behavioral Genetics in Zebrafish to Understand Vertebrate Vision’, in Scott, Jill; Stoeckli, Esther (ed.) Neuromedia: Art and Neuroscience Research. Heidelberg: Springer (Biomedicine), pp. 58–67. Available at: https://doi.org/10.1007/978-3-642-30322-7_3.

Biehlmaier, O., Hehl, J. and Csucs, G. (2011) ‘Acquisition speed comparison of microscope software programs’, Microscopy Research and Technique, 74(6), pp. 539–45. Available at: https://doi.org/10.1002/jemt.20944.

Haug, M. F. et al. (2010) ‘Visual acuity in larval zebrafish: behavior and histology’, Frontiers in Zoology, 7, p. 8. Available at: https://doi.org/10.1186/1742-9994-7-8.

Tschopp, M. et al. (2010) ‘Funduscopy in adult zebrafish and its application to isolate mutant strains with ocular defects’, PLoS ONE, 5(11), p. e15427. Available at: https://doi.org/10.1371/journal.pone.0015427.

Kroger, R. H. H. and Biehlmaier, O. (2009) ‘Space-saving advantage of an inverted retina’, Vision Research, 49(18), pp. 2318–21. Available at: https://doi.org/10.1016/j.visres.2009.07.001.

Kustermann, S. et al. (2008) ‘Survival, excitability, and transfection of retinal neurons in an organotypic culture of mature zebrafish retina’, Cell and Tissue Research, 332(2), pp. 195–209. Available at: https://doi.org/10.1007/s00441-008-0589-5.

Schonthaler, H. B. et al. (2008) ‘The zebrafish mutant lbk/vam6 resembles human multisystemic disorders caused by aberrant trafficking of endosomal vesicles’, Development, 135(2), pp. 387–399. Available at: https://doi.org/10.1242/dev.006098.

Biehlmaier, O., Alam, M. and Schmidt, W. J. (2007) ‘A rat model of Parkinsonism shows depletion of dopamine in the retina’, Neurochemistry International, 50(1), pp. 189–195. Available at: https://doi.org/10.1016/j.neuint.2006.08.001.

Biehlmaier, O., Makhankov, Y. and Neuhauss, S. C. F. (2007) ‘Impaired retinal differentiation and maintenance in zebrafish laminin mutants’, Investigative Ophthalmology & Visual Science, 48(6), pp. 2887–94. Available at: https://doi.org/10.1167/iovs.06-1212.

Schonthaler, H. B. et al. (2007) ‘Evidence for RPE65-independent vision in the cone-dominated zebrafish retina’, European Journal of Neuroscience, 26(7), pp. 1940–9. Available at: https://doi.org/10.1111/j.1460-9568.2007.05801.x.

Bahadori, R. et al. (2006) ‘Nyctalopin is essential for synaptic transmission in the cone dominated zebrafish retina’, European Journal of Neuroscience, 24(6), pp. 1664–74. Available at: https://doi.org/10.1111/j.1460-9568.2006.05053.x.

Bahadori, R. et al. (2006) ‘The Zebrafish fade out mutant: a novel genetic model for Hermansky-Pudlak syndrome’, Investigative Ophthalmology & Visual Science, 47(10), pp. 4523–31. Available at: https://doi.org/10.1167/iovs.05-1596.

Hodel, C., Neuhauss, S. C. F. and Biehlmaier, O. (2006) ‘Time course and development of light adaptation processes in the outer zebrafish retina’, Anatomical Record, Part A, 288(6), pp. 653–62. Available at: https://doi.org/10.1002/ar.a.20329.

Biehlmaier, O. et al. (2005) ‘Photoreceptor morphology is severely affected in the beta,beta-carotene-15,15`-oxygenase (bcox) zebrafish morphant’, European Journal of Neuroscience, 21(1), pp. 59–68. Available at: https://doi.org/10.1111/j.1460-9568.2004.03830.x.

Rinner, O. et al. (2005) ‘Knockdown of cone-specific kinase GRK7 in larval zebrafish leads to impaired cone response recovery and delayed dark adaptation’, Neuron, 47(2), pp. 231–42. Available at: https://doi.org/10.1016/j.neuron.2005.06.010.

Biehlmaier, O., Neuhauss, S. C. F. and Kohler, K. (2003) ‘Double cone dystrophy and RPE degeneration in the retina of the zebrafish gnn mutant’, Investigative Ophthalmology & Visual Science, 44(3), pp. 1287–98. Available at: https://doi.org/10.1167/iovs.02-0363.

Biehlmaier, O., Neuhauss, S. C. F. and Kohler, K. (2003) ‘Synaptic plasticity and functionality at the cone terminal of the developing zebrafish retina’, Journal of Neurobiology, 56(3), pp. 222–36. Available at: https://doi.org/10.1002/neu.10243.

Neuhauss, S. C. F. et al. (2003) ‘Retinal defects in the zebrafish bleached mutant’, Documenta Ophthalmologica, 107(1), pp. 71–8. Available at: https://doi.org/10.1023/a:1024492029629.

Biehlmaier, O., Neuhauss, S. C. and Kohler, K. (2001) ‘Onset and time course of apoptosis in the developing zebrafish retina’, Cell and Tissue Research, 306(2), pp. 199–207. Available at: https://doi.org/10.1007/s004410100447.

Neuhauss, S. C. et al. (1999) ‘Genetic disorders of vision revealed by a behavioral screen of 400 essential loci in zebrafish’, Journal of Neuroscience, 19(19), pp. 8603–15. Available at: http://www.jneurosci.org/content/jneuro/19/19/8603.full.pdf.